Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00290 ATGTTTGGGAGCGTGACGGGTTTGATCCGTAGGGGGCACAAGATAAAAGGGACAGTGGTGTTGATGCGTAAGAATGTGTTGGATGTGAACAGCGTAACAAGTGTTGGTGGAATCATTAGTCAAGGTCTCGGCTTCGCTGGTTCAACGCTCGATAATCTCACTGCCTTCTTGGGCCGTTCTGTCTCACTCCAGCTCATAAGTGCTACCAAATCAGATGCAAACGGAAAAGGGAAACTCGGAAAGGCTACCTTTCTGGAAGGTATCATTACTTCATTGCCAACTTTGGGAGCAGGCCAATCTGCATTCAACATTCATTTTGAATGGGGTGATGAAGATGGAATTCCTGGCGCATTTTTTATCAAGAATTTCATGCAAACTGAGTTCTTCCTTGTCAGTTTGACTCTTGAAGACATTCCAAACCATGGAACCATCCACTTTGTTTGCAACTCCTGGATTTACAATGCTCAACACTTCAAAAATGACCGCATTTTCTTTGCCAACAAGACATTTCTTCCAAGTGATACACCAGCTCCATTAGTCAAGTATAGGGAAGAAGAGCTGCAAAATTTaagaggagatggaaacggggaacgcagaaagtgggaaaggATCTATGATTATGATGTATACAATGATTTGGGCAATCCAGATAAAGGTGAAAAACATGCACGTCCTATTCTTGGAGGGAATGACACCTTTCCTTATCCTCGTAGGGGGAGAACCGGTAGAAGACCAACAAGGAAAGATCCCAACAGTGAGAGTAGAAGCGATGATGTTTATATTCCAAGGGATGAGGCTTTTGGACACTTGAAGTCTTCAGACTTTCTTACTTACGGACTCAAATACGTATCTCAAAATGTTCTTCCAGCTTTGCAATCTGTTTTTGATTTGAATTTCACACCGGGTGAGTTTGACAGCTTTGATGAAGTTCATGGACTCTATTCGGGGGGAATCAAGCTGCCAACAGATGTACTTAGCCAGATTAGTCCACTACCCGTGCTCAAGGAAATCTTCCGAACTGATGGTGAACAAGCTCTCAAGTTTCCTCCTCCTAAAGTAATTCAAGTGAGTAGGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCTGGTGTAAATCCAAACTTGATTCGCTGTCTCCAGGAGTTCCCTCCACGAAGCAAGCTAGATAGCAATGTCTACGGTGATCATACTAGTCAAATAACCAAAGAACACCTTGAGCCTAACTTAGAAGGGCTCACTGTAGATGAGGCAATTCAAAACAAGAGATTGTTCATACTAGATCATCATGACTCAATCATGCCATATTTAAGGCGATTAAATGCAACCGACGCAAAGGGTTATGCTACCAGAACCATCCTGTTCTTGAAAAACGACCGATCTTTAAGGCCACTTGCCATAGAATTGAGTTTGCCACATCCTCAGGGAGATCAATCTGGTCCTATTAGTGAAGTTTTTCTGCCTGCAGATGAAGGTGTTGAAAGTTCTATTTGGCTACTAGCAAAGGCTTATGTGGTTGTGAATGACTCGTGCTACCATCAACTTGTCAGCCATTGGTTAAATACTCATGCAGTTGTGGAGCCATTCATCATAGCAACAAACAGGCATCTCAGTGTTGTTCACCCTATTTATAAACTCCTGCACCCTCACTATCGTGACACCATGAACATAAATTCCCTTGCTCGGGAAATTCTAGTCAACGAAGGTGGCATTATAGAGCAAACATTTTTGTGGGGAAGGTACTCTATGGAAATGTCTTCTGTCATTTACAAGAATTGGGTTTTCCCAGATCAAGCATTGCCTGCTGACCTTATAAAAAGAGGAATGGCAACTGAGGATCCAGCATGTCCTCATGGCATTCGCCTAGTGATAGAGGACTACCCATATGCTGTTGATGGACTTGAGATATGGGATGCTATCAAGACATGGGTCCATGACTATGTTTTCTTGTACTATAAATCTGATGACACACTAAGGGAAGATTCTGAACTCCAAGCCTGGTGGAAAGAACTAGTAGAGGTAGGTCATGGTGACAAGAAAAATGAGCCATGGTGGCCTAAGATGCAAACTCGTGAGGAGCTAGTTGAAACATGCACTACTGTGATATGGACTGCTTCGGCACTTCATGCAGCTGTTAATTTTGGACAGTATCCTTATGGAGGCTTAATCTTGAACCGTCCAACTCTTAGTAGGCGATTCATGCCTGAGAAAGGTTCTCCTGAGTATGAGGAGCTAAGGAAGAGTCCACAGAAGGCTTACTTGAAGACTATTACACCAAAGTTTCAGACCCTTACTGACATTTCTGTTATAGAAATCTTGTCAAGGCATGCTTCTGATGAGGTCTACCTTGGCCAGAGGGACCATCCAAATTGGACATCTGATACAAGGGCATTACAGGCTTTTCAGAAGTTTGGAAACAAGCTCGCTGAGATTGAGAAAAAACTCTCACAGAGAAACAATGATGAGAAACTGAGGAACCGTCAAGGACCGGTTCAGATGCCTTATACCCTTCTTTTCCCTTCTAGTGAGGAAGGTTTAACTTTCAGGGGAATTCCCAACAGCATCTCTATCTGA 2583 0.4228 MFGSVTGLIRRGHKIKGTVVLMRKNVLDVNSVTSVGGIISQGLGFAGSTLDNLTAFLGRSVSLQLISATKSDANGKGKLGKATFLEGIITSLPTLGAGQSAFNIHFEWGDEDGIPGAFFIKNFMQTEFFLVSLTLEDIPNHGTIHFVCNSWIYNAQHFKNDRIFFANKTFLPSDTPAPLVKYREEELQNLRGDGNGERRKWERIYDYDVYNDLGNPDKGEKHARPILGGNDTFPYPRRGRTGRRPTRKDPNSESRSDDVYIPRDEAFGHLKSSDFLTYGLKYVSQNVLPALQSVFDLNFTPGEFDSFDEVHGLYSGGIKLPTDVLSQISPLPVLKEIFRTDGEQALKFPPPKVIQVSRSAWMTDEEFAREMLAGVNPNLIRCLQEFPPRSKLDSNVYGDHTSQITKEHLEPNLEGLTVDEAIQNKRLFILDHHDSIMPYLRRLNATDAKGYATRTILFLKNDRSLRPLAIELSLPHPQGDQSGPISEVFLPADEGVESSIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINSLAREILVNEGGIIEQTFLWGRYSMEMSSVIYKNWVFPDQALPADLIKRGMATEDPACPHGIRLVIEDYPYAVDGLEIWDAIKTWVHDYVFLYYKSDDTLREDSELQAWWKELVEVGHGDKKNEPWWPKMQTREELVETCTTVIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMPEKGSPEYEELRKSPQKAYLKTITPKFQTLTDISVIEILSRHASDEVYLGQRDHPNWTSDTRALQAFQKFGNKLAEIEKKLSQRNNDEKLRNRQGPVQMPYTLLFPSSEEGLTFRGIPNSISI 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00290 860 Gene3D - 494 859 - -
Cca10g00290 860 Gene3D - 360 493 - -
Cca10g00290 860 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 170 IPR036392 GO:0005515
Cca10g00290 860 Gene3D - 271 359 IPR027433 -
Cca10g00290 860 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 860 IPR013819 GO:0016702|GO:0046872
Cca10g00290 860 Pfam PLAT/LH2 domain 69 165 IPR001024 GO:0005515
Cca10g00290 860 SMART LH2_4 13 167 IPR001024 GO:0005515
Cca10g00290 860 ProSitePatterns Lipoxygenases iron-binding region signature 2. 543 553 IPR020834 GO:0016702|GO:0046872
Cca10g00290 860 MobiDBLite consensus disorder prediction 216 260 - -
Cca10g00290 860 Pfam Lipoxygenase 179 843 IPR013819 GO:0016702|GO:0046872
Cca10g00290 860 SUPERFAMILY Lipoxigenase 171 860 IPR036226 -
Cca10g00290 860 MobiDBLite consensus disorder prediction 245 260 - -
Cca10g00290 860 PANTHER LIPOXYGENASE 6 860 IPR000907 GO:0016702|GO:0046872
Cca10g00290 860 ProSitePatterns Lipoxygenases iron-binding region signature 1. 516 530 IPR020833 GO:0016702|GO:0046872
Cca10g00290 860 Gene3D - 171 270 - -
Cca10g00290 860 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Cca10g00290 860 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Cca10g00290 860 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Cca10g00290 860 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Cca10g00290 860 PRINTS Plant lipoxygenase signature 301 322 IPR001246 GO:0016491
Cca10g00290 860 PRINTS Plant lipoxygenase signature 346 362 IPR001246 GO:0016491
Cca10g00290 860 PRINTS Plant lipoxygenase signature 385 404 IPR001246 GO:0016491
Cca10g00290 860 PRINTS Plant lipoxygenase signature 451 475 IPR001246 GO:0016491
Cca10g00290 860 PRINTS Plant lipoxygenase signature 773 787 IPR001246 GO:0016491
Cca10g00290 860 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 6 860 - -
Cca10g00290 860 CDD PLAT_LH2 13 167 IPR042057 -
Cca10g00290 860 Gene3D PLAT/LH2 domain 4 170 - -
Cca10g00290 860 ProSiteProfiles PLAT domain profile. 41 166 IPR001024 GO:0005515
Cca10g00290 860 PRINTS Lipoxygenase signature 498 515 IPR013819 GO:0016702|GO:0046872
Cca10g00290 860 PRINTS Lipoxygenase signature 516 533 IPR013819 GO:0016702|GO:0046872
Cca10g00290 860 PRINTS Lipoxygenase signature 536 556 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00290 Cca-Chr10 3123204 3127371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00290 1 860 Acyl Lipid Metabolism Gene Families AT1G55020 60.592 0.0 1101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00290 K15718 - gmx:547869 1578.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00290 10 3123204 3127371 Cca11g00359 11 4641603 4645678 PCT