Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00246 ATGGCTGGGATTGTGGTGGTTTTTGACTTTGACTCTACAATCATTGAGTGTGATAGTGATAATTGGGTTCTTGATGAGTTTGGTTTAACTGAAAAGTTCTATCAACTTCTTCCGAGCATCCTTTGGAACCCTCTCATGGATAAGATGATGAATGAACTTCATTCACAAGGAAAAACCATTGAAGACATTGTTGAGGTTCTGAATAGAACTCCAATGCACCCCCACATTGTCCCAGCCATTAAGGCTGCATATTCCCTTGGGTGTGAGCTGAAGATTGTGAGTGACGCAAATATTTTCTTTATTGAAACAATTTTGAAGCATCATGGAGTGTGGAATTGTTTCTCGGATATCACTGCAAACCCCAGTTACGTTGATGAAGAAGGGAGGCTTAGAATTTGCCCCTACCATGATTATCTAAAATCTTCTCATGGATGTAATCTCTGTCCACCGAACATGTGCAAGGGATTGGTCATAGAAAGGGTCCAAAATTCTCTTGATGCTGCAGGAAAGAAGAAATTCATCTATCTTGGAGATGGAAATGGAGACTTTTGCCCAAGTTTGAAGCTCAAGGATAGGGATTATTTGATGCCTAGAAAAAATTTTGCATTGTGTGATTTAGTATCTAAAAACTCTAATCTCATCAAGGCGGAGGTACATGCCTGGAGAGATGGTGAAGAACTTTATGAAGTTATGCTTCATATTATCAACAAAGCTATTGGAGAAGGAAACAACATTAGTAGCTCTACTACAATATCAGTTGATTGCAAGTTGGGGTCAATGTCAATTGATGCTCATAATAAACCTTTCCCCAAAGCACTCTCAGTTCCTCAGTAA 834 0.3921 MAGIVVVFDFDSTIIECDSDNWVLDEFGLTEKFYQLLPSILWNPLMDKMMNELHSQGKTIEDIVEVLNRTPMHPHIVPAIKAAYSLGCELKIVSDANIFFIETILKHHGVWNCFSDITANPSYVDEEGRLRICPYHDYLKSSHGCNLCPPNMCKGLVIERVQNSLDAAGKKKFIYLGDGNGDFCPSLKLKDRDYLMPRKNFALCDLVSKNSNLIKAEVHAWRDGEELYEVMLHIINKAIGEGNNISSSTTISVDCKLGSMSIDAHNKPFPKALSVPQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00246 277 Gene3D - 2 189 IPR023214 -
Cca10g00246 277 SUPERFAMILY HAD-like 5 186 IPR036412 -
Cca10g00246 277 PANTHER 2,3-DIKETO-5-METHYLTHIO-1-PHOSPHOPENTANE PHOSPHATASE 1 277 - -
Cca10g00246 277 Pfam Putative Phosphatase 4 235 IPR016965 GO:0016791
Cca10g00246 277 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 277 IPR016965 GO:0016791
Cca10g00246 277 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 199 IPR006384 GO:0016791
Cca10g00246 277 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 187 - -
Cca10g00246 277 PIRSF PLP_phosphatas_PHOSPHO2 1 239 IPR016965 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00246 Cca-Chr10 2698341 2700286 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00246 K13248 - gmx:100789743 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00302 11 3837503 3839661 Cca10g00246 10 2698341 2700286 ECH
Cca10g00246 10 2698341 2700286 Cca10g00246 10 2698341 2700286 ECH