Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00082 ATGGTTCTGGCGGAGTTAGGAGGGAGCATTTCGCGTGCTCTCCAGCAGATGAGCAATGCGACGGTGATCGACGAGAAGGTGCTCAACGATTGCCTCAACGACATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTCGTCCGCGACATGCAGACCAACATCAAGAAGATTGTCAACCTCGATGATCTCGCTGCCGGTCACAACAAACGCAAGATCATCCAACAGGCTGTGTTTAACGAACTCTGCAAAATTCTGGACCCTGGGAAGCCCTCTTTCACTCCGAAAAAGGGGAAAACAAGTGTTGTCATGTTTGTTGGTTTGCAAGGTTCTGGAAAAACCACTACGTGTACAAAATATGCATATTATCATCAGAAGAAAGGCTGGAAGCCAGCTCTAGTATGTGCAGATACGTTCAGGGCTGGTGCATTTGATCAATTGAAGCAAAATGCGACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCCGATCCTGTAAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAATTGTGATCTTATAATTGTTGATACTAGTGGGAGGCACAAACAAGAAGCTGCGCTTTTTGAAGAAATGCGCCAAGTTTCAGAAGCAACGAAACCAGATCTTATTATATTTGTTATGGATAGCAGTATTGGTCAAGCTGCTTTTGATCAAGCGCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTAATCATTACCAAGATGGATGGCCATGCAAAAGGTGGTGGTGCTCTTAGTGCTGTTGCAGCTACAAAGAGTCCTCTCATATTCATTGGAACTGGAGAACATATGGATGAGTTTGAAGTTTTTGATGTTAAGCCATTTGTCAGTCGTCTATTAGGAATGGGTGACTGGTCTGGGTTTATGGACAAAATTCATGAAGTTGTTCCTATGGATCAACAACCAGAACTTCTTCAAAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATAATGAAAATGGGTCCTATCAGCCAGGTGTTTTCTATGCTTCCCGGATTTAGTTCCGAATTAATGCCAAAAGGCCGTGAGAAAGAAAGCCAAGCAAAAATTAAGCGTTACATGACAATGATGGATTCAATGACAAACGAAGAGTTGGATAGTTCAAACCCAAAGCTGATGAATGAATCACGTATGATGCGAATAGCTCGAGGTTCAGGTCGTCTAGTTAGGGAAGTGGTGGAGATGATGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAGATGAAAGGGCTTAAAATACCAAAGAAAGGTGACATGAGTGCCCTGTCCCGAAACATGAATGCCCAGCACATGGGCAAAGTCCTCCCTCCGCAGATGCTCAAGCAAATCGGTGGCATGGGCGGCTTACAAAACTTGATGAAGCAGATGGGATCTGCCAAAGACATGATGGGAATGGGAGGATTGTTTGGTGCTGGTGATTAG 1494 0.4384 MVLAELGGSISRALQQMSNATVIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRKIIQQAVFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLIIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPLIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNIMKMGPISQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRLVREVVEMMEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMGKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMGGLFGAGD 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00082 497 Pfam Signal peptide binding domain 327 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
Cca10g00082 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 298 IPR027417 -
Cca10g00082 497 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Cca10g00082 497 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 493 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Cca10g00082 497 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 493 - -
Cca10g00082 497 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Cca10g00082 497 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Cca10g00082 497 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Cca10g00082 497 CDD SRP54_G 102 294 - -
Cca10g00082 497 SMART AAA_5 100 277 IPR003593 -
Cca10g00082 497 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Cca10g00082 497 Gene3D - 312 436 IPR036891 GO:0006614|GO:0008312|GO:0048500
Cca10g00082 497 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Cca10g00082 497 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Cca10g00082 497 Gene3D - 91 285 IPR027417 -
Cca10g00082 497 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Cca10g00082 497 Gene3D - 5 306 IPR042101 -
Cca10g00082 497 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00082 Cca-Chr10 919371 923263 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00082 K03106 - gmx:100789217 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00082 10 919371 923263 Cca10g00082 10 919371 923263 ECH
Cca10g00082 10 919371 923263 Cca11g00141 11 1739655 1743312 PCT