Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02836 ATGTCCGCCGACCCTGCCCTTATCGAGGAcgccgccgccgagatcgctgccgccgctgacaccggcaaccccgccgcGCAATCGGTGCTAGGATTTCTGTGGGGAATGGGGCTTCTGAGAGAGAGAAGCAAAGGGAAGGCGTTTCTCTACCACCACTTCGCCTCCGAGGGTGGCAACATGCAGTCCAAGATGGCTTTGGCTTACACCTACACGCGCCAAGATATGTTCGAGAAAGCTGTTAAGCTGTACGCTGAATTAGCTGAAGTGGCTGTGAATAGTTTTCTGATTTCGAAGGATTCCCCTGTGATTGAGCCGGTGAGGCTTCACAATGGGGCTGAGGAGAACAAGGAGGCTCTGAGAAAATCGAAGGGGGAAGAGGACGAGGACTTTCAGATACTGGAGTATCAAGCCCAGAAGGGGAATGCTGCTGCCATGTACAAAGTTGGCCTTTTTTACTACTTTGGCCTAAGGGGATTGAGGCGCGATCATTCAAAGGCACTTTCGTGGTTCCTGAAGGCTGTGGAGAAGGGAGAACCAAGATCTATGGAGCTTCTTGGAGAGATCTATGCTAGGGGAGCAGGTGTTGAGAGAAACTACACCAAAGCATTCGAGTGGCTCAAGCTTGCTTCCAGACACCACCTTTATTCAGCATATAATGGGATGGGCTATTTGTATGTCAAAGGCTATGGAGTTGAGAAGAAGAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAGAATGAAGAGGTTGGTGGTCACTATAACCTGGGTGTCATGTATCTCAAGGGGATTGGAGTGAAAAGGGATGTTAAGCTGGCGTGTAAGTACTTTGTGGTGGCTGCTAACCATGGTCAACCAAAGGCGTTCTACCAGCTGGCTAAGATTTTCCATATTGGTGTAGGTTTCAAGAAGAATATTCCCCTGGCTACTGCATTGTATAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAATCATACTTAAAAGGTGATGTTGGCAAGGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTTGACAAATATGGGGAACGTAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGCGAGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTTATTGGAGATGCGTATTACTATGGTCGGGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTACATGCATGCTAAATCACAATCCAATGCACAAGCCATGTTCAACCTTGGATACATGCATGAGCATGGTCAAGGACTTCCATCTGATCTTCATCTAGCCAAGCGTTACTATGATGAAGCTCTAGAGCATGATCCTGCAGCAAAGTTGCCAGTCACGCTGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCTTGGTCAACGTGATTGATTCGTTGCCAGATCTCTATCCTAAGTTAGAAACTTGGGTGGAAGATGTGCTTTTGGAGGAGGGAAATGCTACAATTCTGACCCTCTTTGCATGCCTTCTTACCGTGCTCTATCTCCGCGAGAGGCAACGAAGGCAAGCTGCTGTTGCTGCTGGAGATGTGCCTCAGCCAAATCGCCCCAACGAGCTTGGTGTACCCGCACCTATTTAG 1719 0.4619 MSADPALIEDAAAEIAAAADTGNPAAQSVLGFLWGMGLLRERSKGKAFLYHHFASEGGNMQSKMALAYTYTRQDMFEKAVKLYAELAEVAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLKLASRHHLYSAYNGMGYLYVKGYGVEKKNYTKAKEYFEKAAENEEVGGHYNLGVMYLKGIGVKRDVKLACKYFVVAANHGQPKAFYQLAKIFHIGVGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGDVGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPSDLHLAKRYYDEALEHDPAAKLPVTLALSSLWVRKNYADSFLVNVIDSLPDLYPKLETWVEDVLLEEGNATILTLFACLLTVLYLRERQRRQAAVAAGDVPQPNRPNELGVPAPI 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02836 572 SUPERFAMILY HCP-like 10 89 - -
Cca09g02836 572 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 3 554 - -
Cca09g02836 572 SUPERFAMILY HCP-like 335 476 - -
Cca09g02836 572 Gene3D Tetratricopeptide repeat domain 8 102 IPR011990 GO:0005515
Cca09g02836 572 Gene3D Tetratricopeptide repeat domain 104 216 IPR011990 GO:0005515
Cca09g02836 572 SUPERFAMILY HCP-like 233 363 - -
Cca09g02836 572 Gene3D Tetratricopeptide repeat domain 217 330 IPR011990 GO:0005515
Cca09g02836 572 SUPERFAMILY HCP-like 123 248 - -
Cca09g02836 572 MobiDBLite consensus disorder prediction 552 572 - -
Cca09g02836 572 Gene3D Tetratricopeptide repeat domain 331 485 IPR011990 GO:0005515
Cca09g02836 572 SMART sel1 288 323 IPR006597 -
Cca09g02836 572 SMART sel1 440 475 IPR006597 -
Cca09g02836 572 SMART sel1 252 287 IPR006597 -
Cca09g02836 572 SMART sel1 179 214 IPR006597 -
Cca09g02836 572 SMART sel1 142 178 IPR006597 -
Cca09g02836 572 SMART sel1 24 59 IPR006597 -
Cca09g02836 572 SMART sel1 404 439 IPR006597 -
Cca09g02836 572 SMART sel1 215 251 IPR006597 -
Cca09g02836 572 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 3 554 IPR044623 GO:0030433
Cca09g02836 572 Pfam Sel1 repeat 255 286 IPR006597 -
Cca09g02836 572 Pfam Sel1 repeat 337 355 IPR006597 -
Cca09g02836 572 Pfam Sel1 repeat 406 428 IPR006597 -
Cca09g02836 572 Pfam Sel1 repeat 142 177 IPR006597 -
Cca09g02836 572 Pfam Sel1 repeat 440 474 IPR006597 -
Cca09g02836 572 Pfam Sel1 repeat 180 212 IPR006597 -
Cca09g02836 572 Pfam Sel1 repeat 216 249 IPR006597 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02836 Cca-Chr9 53944651 53948874 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02836 K14026 - gmx:100787823 1058.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02836 09 53944651 53948874 Cca09g02836 09 53944651 53948874 ECH