Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02825 ATGTCACCCCTTCTCAATCTCATCACTCTCTTCTTCCTCATCTGCATTCCAGTGCTCAAAGTTTCAGCAGCCTCAGTGATACTATACAACAAGTGCTCGCACCCAGTGTGGCCCGGGATCCAGCCCGGCGCAGGAAAGCCCGTCTTGGCCCGCGGTGGCTTCAAGCTGGCCCCTAACCGGGCCTACACCCTCCAGCTTCCGGCCCTCTGGTCGGGCCGCTTCTGGGGCCGCCACGGCTGCGCCTTCGACAGCTCGGGCCGCGGGCGCTGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGGCGGGTCCCTGTTCTGCAACGGCGTGGGTGGAGCCCCGCCGGCCACCCTGGCGGAGTTCACACTGGGCAACGAGCAGGACTTCTACGACGTGAGCCTGGTGGACGGTTACAACCTTCCAATAGCCATCACTCCCTTCAAGGGATCTGGGAAATGCAGCTACGCTGGATGCGTGAGCGACCTCAACTCCATGTGCCCTGTGGGCCTGCAAGTGCGGTCACGCGACAAGAAGCGCGTGGTGGCCTGTAAGAGTGCCTGCTCCGCCTTTAACTCCCCCAGATACTGCTGCACAGGCTCCTACGGAACCGCACAGGCCTGCAAGCCCACCGTCTATTCCCGAATCTTCAAGACCGCATGCCCTAAAGCCTACTCCTACGCCTACGACGACCCCACCAGCATTGCCACTTGCACTAAAGCTAATTACTTGGTCACTTTCTGCCCTCACCGTCGCTGA 1155 0.3861 MSPLLNLITLFFLICIPVLKVSAASVILYNKCSHPVWPGIQPGAGKPVLARGGFKLAPNRAYTLQLPALWSGRFWGRHGCAFDSSGRGRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGSLFCNGVGGAPPATLAEFTLGNEQDFYDVSLVDGYNLPIAITPFKGSGKCSYAGCVSDLNSMCPVGLQVRSRDKKRVVACKSACSAFNSPRYCCTGSYGTAQACKPTVYSRIFKTACPKAYSYAYDDPTSIATCTKANYLVTFCPHRR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02825 384 PANTHER OS03G0233200 PROTEIN 233 383 IPR001938 -
Cca09g02825 384 Gene3D Thaumatin 227 381 IPR037176 -
Cca09g02825 384 PANTHER THAUMATIN-LIKE PROTEIN 14 91 - -
Cca09g02825 384 PANTHER THAUMATIN-LIKE PROTEIN 233 383 - -
Cca09g02825 384 SUPERFAMILY Osmotin, thaumatin-like protein 233 382 IPR037176 -
Cca09g02825 384 SUPERFAMILY Osmotin, thaumatin-like protein 26 91 IPR037176 -
Cca09g02825 384 Gene3D Thaumatin 25 99 IPR037176 -
Cca09g02825 384 SMART tha2 26 381 IPR001938 -
Cca09g02825 384 PANTHER OS03G0233200 PROTEIN 14 91 IPR001938 -
Cca09g02825 384 Pfam Thaumatin family 30 91 IPR001938 -
Cca09g02825 384 Pfam Thaumatin family 233 381 IPR001938 -
Cca09g02825 384 ProSiteProfiles Thaumatin family profile. 23 383 IPR001938 -
Cca09g02825 384 CDD TLP-PA 28 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02825 Cca-Chr9 53836876 53838030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02825 1 90 Receptor kinase-like Gene Family AT5G38280 32.222 1.27e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02825 - - gmx:100784636 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02825 09 53836876 53838030 Cca09g02825 09 53836876 53838030 ECH