Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02823 ATGGCTGATGCATTTGATGAAGAGTGTGATTATCTCTTTAAAGCTGTTCTGATTGGAGACTCTGGAGTTGGGAAATCAAATCTTCTCTCAAGGTTTGCAAAAGATGAATTTCGTTTGGATTCCAAACCCACCATAGGAGTGGAATTTGCTTACAGAAACATCAAGGTTGGAGACAAACTCATCAAAGCTCAAATATGGGACACTGCCGGCCAAGAAAGGTTTAGAGCAATCACAAGCTCATACTACCGAGGAGCCTTAGGGGCATTGCTAGTGTATGACATAACCATGAGATCAAGTTATGAGAATGTGAGCAAATGGTTGGTGGAGCTGAGAGAGTTTGGAGGCCAAGACATGGTGGTTGTTCTGGTGGGAAACAAGTGTGATCTTGACCAATCAAGAGAAGTTGAGAAAGAAGAAGGAAAAGGGTATGCGGAAACAGAAGGGTTATGTTTCATGGAAACCTCTGCTTTGAAGAATCTGAACGTTGAGGAAGTGTTCTTGCAAATGATCACAAAGATTTATGACATGACCAGGCAGAAAAGTTTGGCAGCAAAAATGGAGGAGAAACCTTTTAATCTTTTGAATGGGAAAGAGATTCATATAGCTGATGATGAAGTGTCTGCAACTAAACAAACTAGCACTTGCTGTTCAAGATGA 657 0.411 MADAFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITMRSSYENVSKWLVELREFGGQDMVVVLVGNKCDLDQSREVEKEEGKGYAETEGLCFMETSALKNLNVEEVFLQMITKIYDMTRQKSLAAKMEEKPFNLLNGKEIHIADDEVSATKQTSTCCSR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02823 218 SMART ras_sub_4 10 176 - -
Cca09g02823 218 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Cca09g02823 218 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Cca09g02823 218 SMART ran_sub_2 18 209 - -
Cca09g02823 218 ProSiteProfiles small GTPase Rab1 family profile. 8 216 - -
Cca09g02823 218 SMART rab_sub_5 13 176 - -
Cca09g02823 218 Gene3D - 5 216 IPR027417 -
Cca09g02823 218 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 217 - -
Cca09g02823 218 PRINTS Transforming protein P21 ras signature 13 34 - -
Cca09g02823 218 PRINTS Transforming protein P21 ras signature 36 52 - -
Cca09g02823 218 PRINTS Transforming protein P21 ras signature 54 76 - -
Cca09g02823 218 PRINTS Transforming protein P21 ras signature 116 129 - -
Cca09g02823 218 PRINTS Transforming protein P21 ras signature 151 173 - -
Cca09g02823 218 PANTHER DRAB5-RELATED 1 217 - -
Cca09g02823 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 187 IPR027417 -
Cca09g02823 218 CDD Rab11_like 10 174 - -
Cca09g02823 218 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Cca09g02823 218 TIGRFAM small_GTP: small GTP-binding protein domain 12 166 IPR005225 GO:0005525
Cca09g02823 218 ProSiteProfiles small GTPase Ras family profile. 7 194 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02823 Cca-Chr9 53812852 53815904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02823 14 166 EF-hand Containing Proteins AT5G27540 29.091 2.63e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02823 K07976 - gmx:100781746 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02823 09 53812852 53815904 Cca09g02823 09 53812852 53815904 ECH