Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02822 ATGGCGCATTGGATCTCCTCCAAACTTAAAGCCGCAGAGAACATTCTCCACCAGATCGATCAGCAAGCGGCTGAATCGCTTCGCAAGAACGAGAGGCTTCGATCCGAGGAGGAACCGAGCATTGATGCTCCCGCGAAATCATTGAGCAGTTTGTCACTGAAGGATCAATTGAAGAAGAAACCCTTTGAGAGTAATGAATATCACGGAAAACTGCGCAGTGATCCCAATTTTAATGGGCTTAAAGCTACAGCAAGTGCACCCAAACTATCTCCCAAATCTGGTCCTACCCTTACAGATGATGATTGGACTGAGCTCCTAAGTGCACCTGCTCAGTCTATAGCTTCTGCTTCTGGGGGAAATCATAGTAATGGGTTACCTGCACCTCGTGGTTTGAGCAAAAATAGTATTAGAAAGAAGAAGGGTTTGTCTTCAGGGTTGTTGGTGTCGGATGTGACGAGGAATTCAAAGAGTGGTAACAATGGTCAGAGGTCTTTGCAGAAATCAGACTCTGCAAAAGAAGTTAAATTGAGTGGAAAAGCCAGTGATGATGGGAAGGAATCCACCTCTTCAACTTCGACGGGGAGGAGCTCGGCTGTAGAATCGGAGAGTGATAGTAAATGGGGTAAAGGCCTGAAGTATGCTGACAATGACAGTTCTGAGAAGCCTGTGGTTGATGAAAAGGGAAATGAAGAAAATGAGCACCATGTTGATTATTGGGACATTTCTCCACCAGAATTGTTGCAGGAAGACGACAAAACTTTGGCTGCAGAAACCATACCAGGATTGGGGGTTGATAAGGACCAAGAAGCTACGACTGTGGTAGACGTTGATGGCAGTCAAATGAGAAGTGCGGTAAAAGGGAGGCATAAGCTTAATTCAGTCTCTGATGATTTGAAAAGGGGTTCTCCCGTGGCTAGTGATGGAAGttctgattcagatacagattctggttcaacatctgattctgaAAGTGAACATGAGAGggaggaaaggaggaggaggaggGAAAGGATTTTGGCTGAGAAAGCAGCAGCTAAAGCAATAAATGCTATCAAAGAACGGGAGAATATGGTGGCCAAATTAGAGGGAGAGAAGGAAAGTCTAGAGAAAATACTTGAGGAGCGAGCTAAACAACAAGCACAAGAGGCTTCACAGCTTGAGAGCACTATGATGGAAACAATGGAAGCAGTTGACTTAGAAAAGCAGAAACATAATAATACTAGAATGGAAGTTCTTGCACTTTTAGCTAAACTGGAGACTGCCAATGCTGACCTTGCAAGATCCCTTGCATCTGTGCAGTGGAACCTTGAAGTAGAGGTTAAACAAGTAGCAGAACTCAGACAGCAAATCACGACAAAAGAGTTGTTTCATGAAGAGCTCAGAAGGAGAATGAAGAATCCTCGTCAAACTGGGGCTTTACACAATCAACTAGCTTCAAAAGGCGTTGAGTTTGAACGGGAAATTCTTGAGGCAGAGCACTCTTTAATTAATGATAAAGTTGCACAATTGCAGGAAAAGGCAAGGAAGCTGGAATCTGACATTGACATTACAAGGAAAGAAATAGAAGAGCCAACAGAAATTGAAGTTGAGCTCAAGCGAAGGCTTCAACAGATGACTGACCATTTAATACAGAAACAAGCAAAGGTTGAATCACTCTCTTCTGAGAAGGCAAGTCTTGTATTCAGAATCGAGGCTGTGTCAAGGTTGCTGGATGAGAATATGTCAGCATCAAATATGAATCCTGCCTCTTCATCAAGTGACTTAGAATCAGGATTATGGGAGCTCTCCAATTCGAAGTTGAAGCCTATGCTGAAAGCCAGATATCATTCTGGCAAGAGACAGCTTGGATCATTGGTTCAACAACTAGATAATATTTTTGTGACTGGTGCACTTTTCCTGAAAAGGAACTCAACTGCAAAATTGTGGGCTTTGGTATATCTTGTCTGCCTTCATTTCTGGGTGTTTTATATTCTAGTATCACATTCTGGCCCATCAAATGAGGGTAGATCCGGTGCCCAGATCTCCTTGGAGAACATTAATAACACTGGAGGAAGTAGCGACAGTTGTAATCACAGAATAAGCCTCTCATCAGTGAGTAACTTGAAGAGTCATGGATGCGACCTCTGTTGTGACCTTAGCATTAGTAACCAGAGGGTTCCGCGGCGGCGGAGAGTTGTTGAGTTGAAGAAAAACTCTCTTCTCTTCTCTTCCATCGGTATTGAGTTGAGACTTGAGAACCACGCTCTTCGCTCCTTCAATCGCTTACTCCAAACCCACCCTCCCCCACCCATTTCCGCTTTCGACAAGGTTTTGGGAGCCATTGTAAGAATGGGGCACTACCCCACTGCCATCTCTCTCTTCACCCAACTCCACCTTCGTGGAATCACCCCTTCCATTGCCACCCTCACCATCTTCATCAATTGCTACTGCCACCAGTCTCACATGTCTTTCGCCCTCTCCCTTTTGGGAACCATTCTCAAGATGGGTTACCAACCCAACATGGTCACTTTCAACACCCTCATCAATGGTTTCTGCATTAATGGCATGCTATCCAAAGCCCTTATTTTTATCCATGACCTCATGGCCAAAGGCTACCCTTTGGATGAGTTCACTTATGGGTGTTTGATCAATGGTCTCTGTAAAAATGGGCAAACTAGAGATGCCCTTTTATTGTTGCACACGATGGAGCAAGAGTTGATTAGGCCTAATCTTGTCACTTATAGCACAGTCATTGATGGACTATGCAAAGATAGGCTTGTGGCCGATGCGCTACGTTTGTTCTCGCGCGTCACTTCGCGGGGGATTTTGGTTGATGTTGTCACCTACAATTCTCTCATTCGTGGTTGTTGCAGTATCCGTCAATGGCGTGAAGCAACGCGGTTGCTAACTATGATGGTGCAGGGGAACGTTGATCCGGATGATTATACCTTTAACATATTGGTTGATGCATTGTGTAAGGAGGGAAGGATTGTGGAGGCTCAAGGTGTGTTTGCTGTGATGATGAAGAGAGGGGAGAAACCTGATATCGTTACTTACAATGCCTTGATGGAGGGTTATTGTTTAAGCAATGATGTTAGTGCAGCGAGAGAACTGTTCAACATGATGGTCAAAAGAGGCTTGGAACCTGATGTCTTGAATTATAATGTCTTGATTAATGGTTACTGCAAGATTGAGATGGTAGATGAAGCCATGGTTCTCTTTAAAGAGATACGTCAGAAAAATTTAGTCCCTAATATTGCTACTTATAATTCTCTTGTTGATGGCTTGTGCAAATCGGGGAGAATGTCATGTGTGCAGGAGCTTGTTGATGAAATGCGTGATTGGGGTCAATCCCCTGATATAATCACTTACAACATTTTGTTAGATGCTTTTTGCAAAACCCAACCTTATGACAAGGCAGTCTCATTATTTCAACAAATTGTCCAAGGAATTTGGCCTGATTTTAACATGTATAATGTAATTGTTCGGGATTTCTGCAAAGATGAAAAATTAAAGATTGCAGAAGAAGCTCTTCAACATCTTTTGATGCATGGCTCTCGTCCAAATGTCCAAACATATACCATTATGATCAATGCACTTTGTAAAGATGACTCTTGTGATGAAGCTTTGACCTTGCTTTCAAAAATGGATGGCAATGATTGCCCCCCTGATGCAGTAACCTTTGAAACAATTATTGGGGGTCTCCAAGAAAGAAATGAGACTGATAAGGCAGAGAAGCTTCGTCAGGAAATGATTGAAAGAGGTCTTGTAAATGATGAGAAAAGGTTGATGCCTCAACAGCGATTCGGGCTTTTAGTCTGCTTGACCTCTCTGCTTCCATTTTTTCCAAATGGTCTCTATACCCTGCATTTCCTTTCCTCTAAACTGGCTTGCTTCATTCTTAGCAAGTTTCCCAGCAATTGTTTATATTCTCTGGAAAATTGCACTTCCCGTGATCAAGTAAAAACAAGACAGATTACTTGGTCATCGGAGCTTGTGAAGATTCAGTGCATAGCCTTGTGGACTTTGCCAGAGACATGTGCGA 4024 0.4254 MAHWISSKLKAAENILHQIDQQAAESLRKNERLRSEEEPSIDAPAKSLSSLSLKDQLKKKPFESNEYHGKLRSDPNFNGLKATASAPKLSPKSGPTLTDDDWTELLSAPAQSIASASGGNHSNGLPAPRGLSKNSIRKKKGLSSGLLVSDVTRNSKSGNNGQRSLQKSDSAKEVKLSGKASDDGKESTSSTSTGRSSAVESESDSKWGKGLKYADNDSSEKPVVDEKGNEENEHHVDYWDISPPELLQEDDKTLAAETIPGLGVDKDQEATTVVDVDGSQMRSAVKGRHKLNSVSDDLKRGSPVASDGSSDSDTDSGSTSDSESEHEREERRRRRERILAEKAAAKAINAIKERENMVAKLEGEKESLEKILEERAKQQAQEASQLESTMMETMEAVDLEKQKHNNTRMEVLALLAKLETANADLARSLASVQWNLEVEVKQVAELRQQITTKELFHEELRRRMKNPRQTGALHNQLASKGVEFEREILEAEHSLINDKVAQLQEKARKLESDIDITRKEIEEPTEIEVELKRRLQQMTDHLIQKQAKVESLSSEKASLVFRIEAVSRLLDENMSASNMNPASSSSDLESGLWELSNSKLKPMLKARYHSGKRQLGSLVQQLDNIFVTGALFLKRNSTAKLWALVYLVCLHFWVFYILVSHSGPSNEGRSGAQISLENINNTGGSSDSCNHRISLSSVSNLKSHGCDLCCDLSISNQRVPRRRRVVELKKNSLLFSSIGIELRLENHALRSFNRLLQTHPPPPISAFDKVLGAIVRMGHYPTAISLFTQLHLRGITPSIATLTIFINCYCHQSHMSFALSLLGTILKMGYQPNMVTFNTLINGFCINGMLSKALIFIHDLMAKGYPLDEFTYGCLINGLCKNGQTRDALLLLHTMEQELIRPNLVTYSTVIDGLCKDRLVADALRLFSRVTSRGILVDVVTYNSLIRGCCSIRQWREATRLLTMMVQGNVDPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGYCLSNDVSAARELFNMMVKRGLEPDVLNYNVLINGYCKIEMVDEAMVLFKEIRQKNLVPNIATYNSLVDGLCKSGRMSCVQELVDEMRDWGQSPDIITYNILLDAFCKTQPYDKAVSLFQQIVQGIWPDFNMYNVIVRDFCKDEKLKIAEEALQHLLMHGSRPNVQTYTIMINALCKDDSCDEALTLLSKMDGNDCPPDAVTFETIIGGLQERNETDKAEKLRQEMIERGLVNDEKRLMPQQRFGLLVCLTSLLPFFPNGLYTLHFLSSKLACFILSKFPSNCLYSLENCTSRDQVKTRQITWSSELVKIQCIALWTLPETCA 1341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02822 1341 PANTHER ATPASE EXPRESSION PROTEIN 3 743 973 - -
Cca09g02822 1341 PANTHER ATPASE EXPRESSION PROTEIN 3 938 1258 - -
Cca09g02822 1341 MobiDBLite consensus disorder prediction 168 182 - -
Cca09g02822 1341 Pfam PPR repeat 828 854 IPR002885 -
Cca09g02822 1341 Pfam PPR repeat family 1077 1126 IPR002885 -
Cca09g02822 1341 Pfam PPR repeat family 1007 1056 IPR002885 -
Cca09g02822 1341 Pfam PPR repeat family 868 916 IPR002885 -
Cca09g02822 1341 Pfam PPR repeat family 1181 1228 IPR002885 -
Cca09g02822 1341 Pfam PPR repeat family 938 986 IPR002885 -
Cca09g02822 1341 MobiDBLite consensus disorder prediction 56 70 - -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1078 1112 IPR002885 -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1147 1181 IPR002885 -
Cca09g02822 1341 MobiDBLite consensus disorder prediction 319 335 - -
Cca09g02822 1341 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 743 973 - -
Cca09g02822 1341 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 938 1258 - -
Cca09g02822 1341 MobiDBLite consensus disorder prediction 205 244 - -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1043 1077 IPR002885 -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 938 972 IPR002885 -
Cca09g02822 1341 Coils Coil 535 555 - -
Cca09g02822 1341 MobiDBLite consensus disorder prediction 183 203 - -
Cca09g02822 1341 Coils Coil 486 520 - -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 798 832 IPR002885 -
Cca09g02822 1341 MobiDBLite consensus disorder prediction 147 167 - -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 833 867 IPR002885 -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1182 1216 IPR002885 -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 973 1007 IPR002885 -
Cca09g02822 1341 MobiDBLite consensus disorder prediction 27 244 - -
Cca09g02822 1341 Gene3D Tetratricopeptide repeat domain 1023 1130 IPR011990 GO:0005515
Cca09g02822 1341 Gene3D Tetratricopeptide repeat domain 751 883 IPR011990 GO:0005515
Cca09g02822 1341 Gene3D Tetratricopeptide repeat domain 884 994 IPR011990 GO:0005515
Cca09g02822 1341 Gene3D Tetratricopeptide repeat domain 1131 1258 IPR011990 GO:0005515
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1217 1251 IPR002885 -
Cca09g02822 1341 MobiDBLite consensus disorder prediction 108 122 - -
Cca09g02822 1341 Pfam Golgin subfamily A member 5 486 660 IPR019177 GO:0007030
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 903 937 IPR002885 -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 868 902 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 835 868 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 1047 1079 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 1185 1218 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 1010 1044 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 1115 1141 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 1219 1252 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 1081 1113 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 940 973 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 870 902 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 975 1009 IPR002885 -
Cca09g02822 1341 TIGRFAM PPR: pentatricopeptide repeat domain 905 938 IPR002885 -
Cca09g02822 1341 MobiDBLite consensus disorder prediction 27 41 - -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1113 1143 IPR002885 -
Cca09g02822 1341 Coils Coil 344 389 - -
Cca09g02822 1341 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1008 1042 IPR002885 -
Cca09g02822 1341 MobiDBLite consensus disorder prediction 257 335 - -
Cca09g02822 1341 Coils Coil 9 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02822 Cca-Chr9 53800510 53811032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02822 764 1255 Glycosyltransferase AT1G05670 27.383 7.20e-63 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02822 - - gmx:100803473 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02822 09 53800510 53811032 Cca09g02822 09 53800510 53811032 ECH