Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02816 ATGAACACGTTCAACATAATGCACCGCAACTATGTTGTGAGACACTTGCGTACGTGCATCTCTCGTTCTCTTTCCACGAGTATGAGACGAAGCAGAAGCAACAACTCCGTCAAAGTCAAAGTCAAAGACCCTGACATTGTGTCATGGAACAAGGCCATTTCCGTCCACATGCGCAATGGCCACTGCGACTCCGCTCTCCGTGTCTTCAACTCCATGCCTCGCCGAAGCTCAGTGTCCTACAACGCCATGATATCTGGGTACTTGAGGAACGCAAAGTTCTTCCTTGCAAGGGAACTGTTTGATCAAATGCCTGAAAGGGACTTGTTTTCCTGGAATGTTATGCTCACTGGGTATGTCAGGAATCGCAGActcggcgaggcccgcaagttgtttgatctaatgcctgaaaaggacgtTGTTTCCTGGAATGCCATGTTGTCTGGGTATGCCCAGAATGGGTTTGTTGATGAGGCAAGGGAGGTTTTTAATAGGATGCCTCATAGGAATTCCATCTCATGGAATGGGTTGCTTGCAGCTTATGTTCATAATGGGAGACTTGAGGAGGCGCGTGGCTTGTTCGAGTCCCAGTCGGAATGGGAATTGATTTCTTGGAATTGTTTGATGGGTGGGTATGTGAAGAGAAACATGTTAGGTGATGCTAGGCGGCTTTTTGACCAAATGCCTGTGAGGGATGTAATCTCTTGGAACACTATGATATCTGGTTATGCCCAGGTTGGAGATTTGTCTCAAGCTAAGAGGTTGTTCGATGAATCTCCGATTCGGGATGTATTCACTTGGACAGCAATGGTGTCTGGATCTGTGCAGAATGGAATGGTGGATGAAGCAAGAAAGTATTTCGATGAGATGCCTGTAAAAAATGAAATTTCTTACAATGCAATGCTTGCCGGCtatgtgcaatgcaagaaaatggacattgcgagggagttgtttgaggcaatgccttgtcagaatgtaagttcttggaataccatgattactggctTTGGTCAGAATGGTGGTATAGCTCAAGCGAGGATATTGTTTGACATGATGCCTCAGCGTGATTGTGTATCTTGGGCGGCTATTATTGCTGGTTATGCTCAGAATGGTCTATATGAAGAGGCCCTTAACATGTTTGTGGAGATGAAACGAGATGGGGAAAGTTCTAATAGGTCTACTTATAGTTGTGCTTTGAGCACATGTGCTGATATTGCTGCCTTGGAGTTAGGGAAACAAGTTCATGGGCAGGTTGTGAAGGCGGGATTTGAGACTGGGTGCTTCGTGGGAAATGCACTTCTTGGGATGTATTTTAAATGTGGCAGCACAGATGAGGCTAATGATGTTTTTGAAGGAATAGAGGAGAAAGATGTCGTCTCTTGGAACACAATGATAGCTGGTTATGCTAGGCATGGATTTGGCAGACAGGCATTAGTTTTATTCGAGTCAATGGAGAAAGCAGGTGTTAAACCCGATGAGATTACAATGGTGGGCGTTCTGTCTGCTTGTAGTCATTCTGGATTGATAGACAGGGGAACTGAATACTTTTATTCAATGAATAGGGATTACAATGTAACACCAACTTCAAAACATTATACTTGCATGATTGATCTTCTTGGAAGAGCTGGCCGGCTGGAAGAAGCAGAGAACTTAATGAGAAACATGCCTTTTGAGCTAGGTGCTGCATCATGGGGAGCTCTACTAGGTGCAAGCCGGATTCACGGCAACACTGAACTGGCTTCTGGCAGGTGGGTTGATGTTGGCAAGATGAGATCAAAAATGAGGGAAGTTGGTGTGCAGAAAGTAACTGGGTATAGTTGGGTGGAGGTACAAAACAAGATTCATACGTTCGCAGTTGGGGACTGTTTGCATCCAGAAAAAGAAAGAATATATGCCTTCTTAGAAGAGCTAGATTTGAAAATGAGGCTTAAGGGGTATGTTTCTTCAACAAAATTGGTTTTGCATGATGTGGAAGAGGAAGAAAAGGAGCACATGCTCAAGTATCACAGTGAGAAATTAGCTGTTGCATTTGGAATTCTGACTATTCCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAA 2133 0.3971 MNTFNIMHRNYVVRHLRTCISRSLSTSMRRSRSNNSVKVKVKDPDIVSWNKAISVHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFFLARELFDQMPERDLFSWNVMLTGYVRNRRLGEARKLFDLMPEKDVVSWNAMLSGYAQNGFVDEAREVFNRMPHRNSISWNGLLAAYVHNGRLEEARGLFESQSEWELISWNCLMGGYVKRNMLGDARRLFDQMPVRDVISWNTMISGYAQVGDLSQAKRLFDESPIRDVFTWTAMVSGSVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQCKKMDIARELFEAMPCQNVSSWNTMITGFGQNGGIAQARILFDMMPQRDCVSWAAIIAGYAQNGLYEEALNMFVEMKRDGESSNRSTYSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMEKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMNRDYNVTPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFELGAASWGALLGASRIHGNTELASGRWVDVGKMRSKMREVGVQKVTGYSWVEVQNKIHTFAVGDCLHPEKERIYAFLEELDLKMRLKGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPXXXXXXXXXXXXXXXXXXXXXXXXXXXX 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02816 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 230 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 47 76 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 295 325 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 531 554 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 458 492 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 202 230 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 233 257 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 109 140 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 357 388 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 140 169 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 171 195 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 264 291 IPR002885 -
Cca09g02816 710 TIGRFAM PPR: pentatricopeptide repeat domain 78 108 IPR002885 -
Cca09g02816 710 Gene3D Tetratricopeptide repeat domain 408 523 IPR011990 GO:0005515
Cca09g02816 710 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 579 683 - -
Cca09g02816 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 106 IPR002885 -
Cca09g02816 710 SUPERFAMILY TPR-like 47 195 IPR011990 GO:0005515
Cca09g02816 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 265 IPR002885 -
Cca09g02816 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Cca09g02816 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Cca09g02816 710 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 72 132 - -
Cca09g02816 710 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 39 71 - -
Cca09g02816 710 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 134 579 - -
Cca09g02816 710 Pfam PPR repeat 295 322 IPR002885 -
Cca09g02816 710 Pfam PPR repeat 530 554 IPR002885 -
Cca09g02816 710 Pfam PPR repeat 202 230 IPR002885 -
Cca09g02816 710 Pfam PPR repeat 140 168 IPR002885 -
Cca09g02816 710 Pfam PPR repeat 264 292 IPR002885 -
Cca09g02816 710 Pfam PPR repeat 47 75 IPR002885 -
Cca09g02816 710 Pfam PPR repeat 78 107 IPR002885 -
Cca09g02816 710 Pfam PPR repeat 109 138 IPR002885 -
Cca09g02816 710 Pfam PPR repeat 233 257 IPR002885 -
Cca09g02816 710 Pfam PPR repeat 171 194 IPR002885 -
Cca09g02816 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 137 IPR002885 -
Cca09g02816 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 45 75 IPR002885 -
Cca09g02816 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Cca09g02816 710 Gene3D Tetratricopeptide repeat domain 324 407 IPR011990 GO:0005515
Cca09g02816 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Cca09g02816 710 PANTHER OS07G0578800 PROTEIN-RELATED 579 683 IPR045215 GO:0003723|GO:0009451
Cca09g02816 710 PANTHER OS07G0578800 PROTEIN-RELATED 72 132 IPR045215 GO:0003723|GO:0009451
Cca09g02816 710 PANTHER OS07G0578800 PROTEIN-RELATED 39 71 IPR045215 GO:0003723|GO:0009451
Cca09g02816 710 PANTHER OS07G0578800 PROTEIN-RELATED 134 579 IPR045215 GO:0003723|GO:0009451
Cca09g02816 710 Gene3D Tetratricopeptide repeat domain 138 197 IPR011990 GO:0005515
Cca09g02816 710 Gene3D Tetratricopeptide repeat domain 198 259 IPR011990 GO:0005515
Cca09g02816 710 Gene3D Tetratricopeptide repeat domain 260 323 IPR011990 GO:0005515
Cca09g02816 710 Gene3D Tetratricopeptide repeat domain 18 137 IPR011990 GO:0005515
Cca09g02816 710 Pfam PPR repeat family 455 503 IPR002885 -
Cca09g02816 710 Pfam PPR repeat family 355 402 IPR002885 -
Cca09g02816 710 Pfam DYW family of nucleic acid deaminases 644 683 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02816 Cca-Chr9 53737040 53740038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02816 50 680 Glycoside Hydrolase AT3G49170 29.412 1.86e-97 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02816 - - gmx:100804011 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02816 09 53737040 53740038 Cca09g02816 09 53737040 53740038 ECH