Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02809 ATGAGTCAGGAGCTGTTAGAAACGTACGCCTGCATGCCCTCGACGGAGCGCGGCCGCGGGATTCTGATCTCCGGCGACGCCAAGTCCAACTCCATCGTCTACACCAACGGCAGATCCGTCGTCCTCATGAGCCTCCAGAACCCCCTCCAAGTCTCCGTCTACGGCGACCACGCCTACCCCGCCACCGTGGCCCGCTTCTCCCCCAACGGCGAGTGGGTGGCCTCCGCGGACGCCTCCGGCACCGTCAGGATCTGGGGCACGCGCAACGACTTCGTTTTGAAGAAGGAGTTCCGAGTCCTCTCCGGCCGCATCGACGACCTCCAGTGGTCCCCCGACGGCCTCCGAATGGTTGCCTGCGGCGAAGGCAAAGGGAAGTCCTTCGTCCGCGCTTTCATGTGGGATTCCGGGACTAATGTTGGTGAATTCGATGGCCACTCGAGGCGGGTTTTGAGTTGCGCCTATAAACCCACCAGGCCCTTTCGCGTTGTCACTTGTGGAGAGGATTTTCTTGTCAACTTTTACGAGGGACCTCCCTTCAGATTTAAGCTATCTCATAGGGATCATTCAAATTTTGTCAATTGTGTGAGATATTCTCCAGATGGCAGTAAATTTATAAGTGTAAGTTCTGACAAGAAGGGTATCATATTCGATGGAAAGACAGCAGAAAAGATTGGTGAGTTGTCTTCTGAAGGTGGGCATACTGGTAGTATTTATGCTGTTAGCTGGAGTCCCGATGGAAAGCAGGTGCTCACTGTATCTGCTGACAAATCTGCAAAAGTATGGGACATATCTGATGACAGTAACGGAAAGGTGAAGAAAACATTGACTTGTCCTGGCTCTGGTGGAGTTGAAGACATGCTAGTGGGGTGCCTATGGTTGAATGATTATCTTGTGACTGTTTCTCTTGGTGGGACAATATCTATATTTTTAGCAAGTGATCTTGATAAAGCCCCGACAGCATTTTCTGGACATATGAAAAATGTTTCCTCCTTAACTATTCTTAGAAGTAACCCTAGAGTGCTCTTGTCTAGCAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAATGGGAAACTACAAAGGAAGGAAAGTTCTCAAATCAAATGCTTAGCAGCGGTAGAAGAAGAGATTGTCACAACTGGATTCGATAATAAGATATGGCGAGTTTCTTTGCATGGGGATCAGTGTGGAGATGCTGAAGCCATTGATATAGGAAGTCAACTAAAGGACTTAAGTGTTGCACTTCTTTCTCCTGAACTTGCTCTAGTTTCAATTGATTCAGGAATTGTCATGCTGCGTGGTACCAAAATTGTGTCAACCATTAATCTTGGGTTTATTGTGTCCGCATCTGCTGTCTCACCTGATGGAAGTGAAGCCATTATCGGTGGACAGGATGGTAAATTGCACATATATTCTATTTCTGGTGATACTCTTGTAGAAGAGGCAGTCCTTGAGAAACATAGGGGTGCTATTAGTGTCATACGGTATTCTCCAGATGTTTCAATGTTTGCATCAGGGGATGTCAATAGAGAAGCTGTAGTGTGGGACCATGCCTCCCGAGAGGTGAAGCTTAAGAACATGTTGTATCATACTGCTAGGATAAACTGCCTTGCGTGGTCCCCTGATAGCCGTAGGATTGCTACAGGATCACTTGACATGTGTGTCATCATATATGAAATTGATCAGCCTGCATCTAGTAGAGTTACCATAAAGGGTGCTCATTTAGGCGGGGTTTATGGATTAGCATTCACTGATGAGTATAGTTTGGTTAGCTCAGGCGAGGATGCTTTTATCCGTGTTTGGAGGATAACCCCTGCTTGA 1833 0.4719 MSQELLETYACMPSTERGRGILISGDAKSNSIVYTNGRSVVLMSLQNPLQVSVYGDHAYPATVARFSPNGEWVASADASGTVRIWGTRNDFVLKKEFRVLSGRIDDLQWSPDGLRMVACGEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRVVTCGEDFLVNFYEGPPFRFKLSHRDHSNFVNCVRYSPDGSKFISVSSDKKGIIFDGKTAEKIGELSSEGGHTGSIYAVSWSPDGKQVLTVSADKSAKVWDISDDSNGKVKKTLTCPGSGGVEDMLVGCLWLNDYLVTVSLGGTISIFLASDLDKAPTAFSGHMKNVSSLTILRSNPRVLLSSSYDGLIVKWIQGIGYNGKLQRKESSQIKCLAAVEEEIVTTGFDNKIWRVSLHGDQCGDAEAIDIGSQLKDLSVALLSPELALVSIDSGIVMLRGTKIVSTINLGFIVSASAVSPDGSEAIIGGQDGKLHIYSISGDTLVEEAVLEKHRGAISVIRYSPDVSMFASGDVNREAVVWDHASREVKLKNMLYHTARINCLAWSPDSRRIATGSLDMCVIIYEIDQPASSRVTIKGAHLGGVYGLAFTDEYSLVSSGEDAFIRVWRITPA 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02809 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 520 IPR001680 GO:0005515
Cca09g02809 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 572 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 47 86 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 178 217 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 525 563 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 268 310 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 481 520 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 135 175 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 567 606 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 438 476 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 220 262 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 90 134 IPR001680 GO:0005515
Cca09g02809 610 SMART WD40_4 314 354 IPR001680 GO:0005515
Cca09g02809 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 264 - -
Cca09g02809 610 PANTHER ACTIN-INTERACTING PROTEIN 1-1 4 609 - -
Cca09g02809 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
Cca09g02809 610 SUPERFAMILY WD40 repeat-like 296 607 IPR036322 GO:0005515
Cca09g02809 610 Gene3D - 12 338 IPR015943 GO:0005515
Cca09g02809 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 610 IPR001680 GO:0005515
Cca09g02809 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Cca09g02809 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 610 - -
Cca09g02809 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 520 - -
Cca09g02809 610 Pfam WD domain, G-beta repeat 231 262 IPR001680 GO:0005515
Cca09g02809 610 Pfam WD domain, G-beta repeat 534 562 IPR001680 GO:0005515
Cca09g02809 610 Pfam WD domain, G-beta repeat 186 212 IPR001680 GO:0005515
Cca09g02809 610 Pfam WD domain, G-beta repeat 64 85 IPR001680 GO:0005515
Cca09g02809 610 Pfam WD domain, G-beta repeat 576 605 IPR001680 GO:0005515
Cca09g02809 610 CDD WD40 57 350 - -
Cca09g02809 610 Gene3D - 8 607 IPR015943 GO:0005515
Cca09g02809 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Cca09g02809 610 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 4 609 - -
Cca09g02809 610 ProSitePatterns Trp-Asp (WD) repeats signature. 249 263 IPR019775 -
Cca09g02809 610 SUPERFAMILY WD40 repeat-like 29 353 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02809 Cca-Chr9 53683585 53689406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02809 464 608 Miscellaneous Gene Families AT5G08390 29.054 3.76e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02809 K24736 - gmx:100794702 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02809 09 53683585 53689406 Cca09g02809 09 53683585 53689406 ECH