Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02799 ATGGGAATTGGGAACCAGGAAGTGATGAAAGAAGTGAAGAGGCAGCTGTGGTTAGCAGTGCCTCTCTTCTCAGTTGGAATTCTGCAATTCATTCTTCAAACCATCTCTTTGATGTTTGTTGGCCACCTTGGTACCCTTCCTCTCTCTGGTGCTTCCATGGCCACTTCCTTTGCATCGGTCACTGGCTTCAACTTATTGttggggttagctactgcactggacacattttgtggtcaatcaaatggggcaggacagtaccatatgcttggaatacacatgcaaagatccatggttgttgttttaacgatgagtgtgttccttgccatcatttgggccaacacagaaccaattctgaatgctatgcaccaagacaaagccatatccaaggaagctggctcctatgcgcgttacatgatcccgagtttatttgcatatggtcttcttcagtgcattctcaagttcttgcaaacccaaaacgttgtgttcccaatggtgctaacttctggaattgcagctatgtttcatgtccttttgtgttggcttttggttttcaagtcaaggcttggaagcagaggagcagctttggccaattccatatcttactggcttaacgcaatcttcatttctctctatgtgaggttctcttcttcatgcaaacaatcttggacaggcttttcaaacatggccctgcacaacctacttgaattccttaaactcgctgttccttcagctcttatgctatgcttaaaagtctggacatttgaattgatgctcctcgtggctggacttcttcctaacccagcaatagaaacttcagtgctttcaatatgccttaatacatttggtttagcttggatgatcccttttggattcagtgctgctgtaagtgtaaGGGTGTCCAATGAATTGGGGGGTGGAAATGCAGAAGCAGCGAGTGTAGCAGTAGCGGTGGTGTTAGTGATGGTGTTGATTGAAGGGGTGATATTAGTTTCAGCGATGATTCTACTTCGGAATGCGTGGGGACATGTTTATAGTAATGACAAAGATGTAATCAGATACGTCTCAGTCATGATGCCAATTTTGGCCGTTTCAAGCTTCCTAGATGGCTTCCAAAGTGCACTTTCAGgcattcttgcaggatgtgggtggcagaagattggtgcctgtgtcaatcttggatcattttatcttataggggttccttgtgctatagtactagcatttccactacacatgaaagCCAAGgggctctggttagggatcatttctgcatttattgtgcaagtgttgttttacgtactcattacttttcgaactaattgggaggaacaaGCACAGAAAGCTCAAAGAAGAGTTGAGCGCTCAACCATCTCGCCAACTACTCAGGACAACGAATTACCACGGCAAAAGTTGGAACTAGTTCCCTAA 1428 0.173 MGIGNQEVMKEVKRQLWLAVPLFSVGILQFILQTISLMFVGHLGTLPLSGASMATSFASVTGFNLLLGLATALDTFCGQSNGAGQYHMLGIHMQRSMVVVLTMSVFLAIIWANTEPILNAMHQDKAISKEAGSYARYMIPSLFAYGLLQCILKFLQTQNVVFPMVLTSGIAAMFHVLLCWLLVFKSRLGSRGAALANSISYWLNAIFISLYVRFSSSCKQSWTGFSNMALHNLLEFLKLAVPSALMLCLKVWTFELMLLVAGLLPNPAIETSVLSICLNTFGLAWMIPFGFSAAVSVRVSNELGGGNAEAASVAVAVVLVMVLIEGVILVSAMILLRNAWGHVYSNDKDVIRYVSVMMPILAVSSFLDGFQSALSGILAGCGWQKIGACVNLGSFYLIGVPCAIVLAFPLHMKAKGLWLGIISAFIVQVLFYVLITFRTNWEEQAQKAQRRVERSTISPTTQDNELPRQKLELVP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02799 475 TIGRFAM matE: MATE efflux family protein 21 418 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca09g02799 475 CDD MATE_eukaryotic 11 447 IPR045069 GO:0042910|GO:1990961
Cca09g02799 475 PANTHER PROTEIN DETOXIFICATION 5 453 - -
Cca09g02799 475 Pfam MatE 21 181 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca09g02799 475 Pfam MatE 242 404 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca09g02799 475 PANTHER MULTIDRUG RESISTANCE PROTEIN 5 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02799 Cca-Chr9 53604768 53607437 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02799 K03327 - gmx:100776083 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02799 09 53604768 53607437 Cca09g02799 09 53604768 53607437 ECH