Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02794 ATGCCTATGGCATATTCGGGCATATTTCAGGGCTTCGTCAGATTCAAAGCCATGTCTCGCCTTCGCTGCACTCCTCTCAGACCTTCTCTTCCCTCCATTTCCGCCACTCCCTTTCACCGCACTGCCATTCGCCTCCGCTCCTGCTCCGCCGCGCTTCACGTCATCAACGACACGCGCCACCGGACCGTCACGTTGCCGTTTTGGCACCAGCGCAGCTCCGGCTACGGTCGTTTTGCCTACCAGGATGTGTCCAGTGACGATTCCGACGTCGAACTCGCGCCTTCTCACAACCAACAAGTGGTTGATTCGACGCTCGAGAACATTGACGAATGGAGATGGAAGCTGACCATGCTTCTGCGCAACAACGAGGAACAAGAAGTGGTGTCAAGAGAGAAGAAGGACCGTCGTGATTTCGAGCAACTTTCGACTATAGCTACCAGGATGGGTTTGTATAGCCGGCAATATGCTAGAGTTGTTGTGTTTAGCAAGCCGCCTTTGCCTAATTACCGCCCTGATCTAGATGATAAGCGTCCACAAAGAGAGGTAGTCTTACCATTTGGTATTCATAAAGAAGTAGACTCTCATCTCCTTGCCCATCTTTCACAAAAGGCTACAAACAGGTTGGGTTCTTTGAATGATTCCTTGCATAGATCCAGTGATGCTAAAAGCATTCCAGCCAATGAAGGAATGTATGAAAAGCCAGAGCCCATGACCCATAATAGTATTGTCAAGGAGAAAATCCTTCAACGAAGAAGTTTGCAAATGCGTCATCAGCAACATGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAAGTCTCCCTGCATTCAAAGAGAAGGATGCATTTTTGAGAGTTATGTCAGAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGATTGAAGCTGTAAGTGGAGCTGTATGTAACATAATATGTACTCAACCTAGAAGAATATCAGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGAGAGAAATTGGGAGAATCTGTTGGATACAAAGTCCGTTTGGAGGGATTGAAAGGGAGGGATACTCGGCTTCTTTTTTGTACCACAGGTGTTTTATTGCGGAGACTTCTCTTGGATAGGAGTTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCACGAACGTGGAATGAATGAAGATTTTCTTCTAATTGTCCTGAAGGAACTTCTCCCTCGTCGTCCTGATTTGAAGTTGATTTTGATGAGTGCAACGTTAAATGCTGAGCTTTTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCGGTTCGAGCACATTTTCTTGAGAATATACTGGAAAGGACTGGATATCGGTTGACACCTTATAATCAAATTGATGATTATGGTCAAGAAAAGACATGGAAAATGCAGAAACAAGCTCAAGCGTTCAGAAAAAGAAAGAGCCAGATTGCTTCTGCTGTTGAGGATGCTTTAGAAGTTGCTGACTTTAAGGGCTATAGCCTACGCACTCAAGATTCGTTGTCCTGCTGGTACCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGCCATATTGTTAAGAATGAAAGACCGGGTGCCATTTTGGTTTTTATGACCGGTTGGGATGATATAAACTCGTTGAAGGATCAACTCCAAGCTCATCCTTTGTTGGGTGATCAGAGCCGAGTATTGCTTCTTGCATGCCACGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGGGTGAGGAAAATTGTTCTGGCAACTAACATGGCTGAGACTAGTATCACCATCAATGATGTTGTCTTTGTGGTTGACTCTGGAAAAGCAAAAGAAACATCATATGACGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTTCTGCTCGGCAGAGAAGAGGAAGGGCTGGACGTGTTCAGCCTGGTGAATGCTACCATCTTTATCCCCGATGTGTCTATGATGCTTTTGCTGATTATCAATTGCCAGAGCTTTTAAGAACACCTTTGCAGTCCTTATGTCTGCAAATCAAAACTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGAGCTCTACAGCCACCAGAGCCTCTATCGGTTCAAAATGCTATTGATTATTTGAAGATCATTGGGGCCTTAGACGAGAATGAAAATTTAACAGTTTTAGGGCACAAATTGGCAATGCTTCCTGTAGAACCCAAACTTGGCAAGATGCTCATTTTGGGAACTATCTTCAAGTGTTTGGATCCTATAATGACCGTTGTTGCTGGTCTTAGTGTAAGAGATCCATTTGTAATGCCATCTGACAAGAAGGATCTTGCAGAATCTGCCAAAGCTCAATTTGCTGCTCGTGACTACAGTGATCATCTTGCACTTATCCGGGCTTATGAGGGTTGGAGAGATGCTGAAACACAGCAAGCAGGTTACGAGTACTGTTGGCGAAATTTTCTTTCTTCGCAAACACTTAGGGCCATTGACTCTCTTCGAAAGCAATTCTTTTACTTGCTCAAAGATATTGGTCTGGTTAATAACAATTCTGAAACCTACAATACATGGAGTCATGAAAAGCATCTACTCCGAGCAGTCATCTGTGCCGGTTTGTTTCCAGGAATATCCTCTGTTGTGAACAAAGATAAGTCGATAGCACTGAAAACAATGGAGGATGGTCAGGTTCTTCTGTATTCTAGCTCTGTAAATGGTGCTGTACCCCGAATTCCATACCCATGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCGGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAGATGGTCACCTGAAAATGTTGGGAGGGTATTTGGAGTTTTTCATGAAACCAGAATTAGCCAAGACTTACTTAAGCTTAAAGATGGAACTGGAAGAATTGATACAGAGAAAACTTCTGGATCCCACATTGGAAACACAATCGCATACTGAGCTACTTTCAGCTGTTAGATTGTTGGTATCAGAGGACCATTGTGATGGTAGATTTGTGTTTGGTCGCCAGATCCTACAACAATTGAAGAAGGAAACAAACTCCAAAAGTGGTGGAGTTGGGGGTGATAATTCTAAAAATCAGCTTCAAACATTCCTTAACAGGGCTGGACACGAATCACCAACTTACAAAACAAGGCAGCTGAAAAACAACCAATTCCGTTCTACTGTCATATTCAATGGGTTGAATTTTGTTGGTCAGCCATGCAGCAGCAAAAAATTAGCCGAAAAATCTGCTGCTGCTGAGGCTCTTCTATGGTTAAAAGGGGATAGTCATTCATCTAATGATTTTGACCATGCATCAGTGCTTTTGAAAAAGAGCAACAAAAGTAGGAAAAAATCGTTTAGTGGTGCTAAATGGAGTTGA 3525 0.4284 MPMAYSGIFQGFVRFKAMSRLRCTPLRPSLPSISATPFHRTAIRLRSCSAALHVINDTRHRTVTLPFWHQRSSGYGRFAYQDVSSDDSDVELAPSHNQQVVDSTLENIDEWRWKLTMLLRNNEEQEVVSREKKDRRDFEQLSTIATRMGLYSRQYARVVVFSKPPLPNYRPDLDDKRPQREVVLPFGIHKEVDSHLLAHLSQKATNRLGSLNDSLHRSSDAKSIPANEGMYEKPEPMTHNSIVKEKILQRRSLQMRHQQHDWQESPEGQKMLEFRRSLPAFKEKDAFLRVMSENQVVVVSGETGCGKTTQLPQYILESEIEAVSGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGLKGRDTRLLFCTTGVLLRRLLLDRSLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPDLKLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLENILERTGYRLTPYNQIDDYGQEKTWKMQKQAQAFRKRKSQIASAVEDALEVADFKGYSLRTQDSLSCWYPDSIGFNLIEHVLCHIVKNERPGAILVFMTGWDDINSLKDQLQAHPLLGDQSRVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSRALQPPEPLSVQNAIDYLKIIGALDENENLTVLGHKLAMLPVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKAQFAARDYSDHLALIRAYEGWRDAETQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVNNNSETYNTWSHEKHLLRAVICAGLFPGISSVVNKDKSIALKTMEDGQVLLYSSSVNGAVPRIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQRKLLDPTLETQSHTELLSAVRLLVSEDHCDGRFVFGRQILQQLKKETNSKSGGVGGDNSKNQLQTFLNRAGHESPTYKTRQLKNNQFRSTVIFNGLNFVGQPCSSKKLAEKSAAAEALLWLKGDSHSSNDFDHASVLLKKSNKSRKKSFSGAKWS 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02794 1174 Pfam Helicase associated domain (HA2) 741 827 IPR007502 GO:0004386
Cca09g02794 1174 Pfam Double-stranded RNA binding motif 1078 1140 IPR014720 -
Cca09g02794 1174 Pfam Helicase conserved C-terminal domain 546 677 IPR001650 -
Cca09g02794 1174 SMART ha2_5 740 831 IPR007502 GO:0004386
Cca09g02794 1174 SMART helicmild6 572 678 IPR001650 -
Cca09g02794 1174 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 544 718 IPR001650 -
Cca09g02794 1174 SMART DRBM_3 1078 1141 IPR014720 -
Cca09g02794 1174 CDD DEXHc_RHA-like 294 454 - -
Cca09g02794 1174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 878 IPR027417 -
Cca09g02794 1174 Pfam DEAD/DEAH box helicase 290 439 IPR011545 GO:0003676|GO:0005524
Cca09g02794 1174 Gene3D - 720 822 - -
Cca09g02794 1174 Gene3D - 1059 1145 - -
Cca09g02794 1174 PANTHER ATP-DEPENDENT RNA HELICASE 66 1088 - -
Cca09g02794 1174 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 897 979 IPR011709 -
Cca09g02794 1174 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 455 IPR014001 -
Cca09g02794 1174 SMART ultradead3 276 472 IPR014001 -
Cca09g02794 1174 SUPERFAMILY dsRNA-binding domain-like 1075 1145 - -
Cca09g02794 1174 MobiDBLite consensus disorder prediction 210 235 - -
Cca09g02794 1174 CDD SF2_C_RHA 535 686 - -
Cca09g02794 1174 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 66 1088 - -
Cca09g02794 1174 Gene3D - 231 456 IPR027417 -
Cca09g02794 1174 Gene3D - 540 696 IPR027417 -
Cca09g02794 1174 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1077 1142 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02794 Cca-Chr9 53562615 53573897 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02794 K14442 - gmx:100791006 2105.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02794 09 53562615 53573897 Cca09g02794 09 53562615 53573897 ECH