Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02730 ATGGCTGtgcttctgcttttcttcctgctcccactttctatttctgcatctgGGGACGCTTTTATTGGTGTCAACATTGGTTCAGATATATCTGACGTGCCAGGTCCAACAGATATTGTTGCTCTTCTGAAGGCTCAAAGTATCCAACATGTCAGACTCTATGACGCTGACCGAGCATTACTTGTTGCACTTGCCAACACAGGAATCCGTGTCACAGTCTCTGTTCCCAATGACCAGCTACTTGGCATTGGTCAGTCCAATGTCACTGCAGCAAACTGGGTTTCTCGAAATGTCATAGCTCATGTTCCTGCTACCAACATTACTGCCATATGTGTTGGATCTGAGGTCCTAACTACCCTCCCAAATGCTGCCCCTATTCTAGTCTCTGCCATAAATTTCATTCACTCTGCTCTTGTTGCTGCTAATCTGGATCGACAAATTAAAGTCTCTAGTCCACACTCTTCCTCTATCATCCTTGTCTCTTTCCCACCTTCCCAAGCATTTTTCAACCGTACTTGGAATCCAGTCTTCGTTCCCTTGCTTAAATTTTTGCAATCAACAGGTTCATATCTTATGCTCAATGTGTACCCATATTATGATTATCGCCAAACCAATGGTACAGTCCCTCTGGATTATGCTTTATTCCGCCCCCTACCTCCAAATAAGGAAGCTGTTGATTCCAACACCCTGCTGCATTATACTAATGTTTTTGATGCAGTTGTTGATGCTGCTTATTTTGCGATGTCCGATTTGAACTTCAGCAATATCCCTGTTCTGGTGACTGAGTCGGGATGGCCATCCAAAGGTGACTCGTCTGAGCCTGATGCAACTGTTGATAATGCTAACACTTACAACAGTAACTTGATAAGACACGTCCTTAACAATACGGGGACTCCTAAACATCCTGGAGTTGCAGTTAGTACATATATTTATGAGCTTTATAATGAAGACTTAAGATCAGGTCCCGTCTCTGAAAAGAACTGGGGCCTATTTTACGCTAATGGAGAACCAGTGTATACGTTACACTTGACTGGTGCTGGTATTATATTTGCAAATGATACAACAAACCAAACCTTTTGTGTCTCAAAGAGTAATGCTGACCCTAAGATGTTACAGGCAGCACTTGATTGGGCTTGTGGACCTGGGAAGGTGGATTGTTCCCCTTTGCTGCAGGGTCAACCATGTTATGAACCTAATAATGTAGTTGCACATTCTACATATGCTTTCAATGCATATTATCAGAAGATGGATAAATCTCCTGGGAGTTGTGATTTCAAAGGGGTTGCCTCTATCACTACCACCGACCCAAGCCATGGTTCTTGTATATTTCCAGGAAGTCATGGTAGAAACGGCACCAGAATAAATGGCACATCATTGGCCCCATCTAATTCCACAAGTTCAGGCTGCTTGTCACGATACCACTACAATGGTGGTGGATCTTTCACAAGCTCGTTGATTCTAGCTATTTTACTTCTGTGTGCAGTTGTGTAA 1491 0.4185 MAVLLLFFLLPLSISASGDAFIGVNIGSDISDVPGPTDIVALLKAQSIQHVRLYDADRALLVALANTGIRVTVSVPNDQLLGIGQSNVTAANWVSRNVIAHVPATNITAICVGSEVLTTLPNAAPILVSAINFIHSALVAANLDRQIKVSSPHSSSIILVSFPPSQAFFNRTWNPVFVPLLKFLQSTGSYLMLNVYPYYDYRQTNGTVPLDYALFRPLPPNKEAVDSNTLLHYTNVFDAVVDAAYFAMSDLNFSNIPVLVTESGWPSKGDSSEPDATVDNANTYNSNLIRHVLNNTGTPKHPGVAVSTYIYELYNEDLRSGPVSEKNWGLFYANGEPVYTLHLTGAGIIFANDTTNQTFCVSKSNADPKMLQAALDWACGPGKVDCSPLLQGQPCYEPNNVVAHSTYAFNAYYQKMDKSPGSCDFKGVASITTTDPSHGSCIFPGSHGRNGTRINGTSLAPSNSTSSGCLSRYHYNGGGSFTSSLILAILLLCAVV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02730 496 SUPERFAMILY (Trans)glycosidases 22 342 IPR017853 -
Cca09g02730 496 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 4 484 IPR044965 GO:0004553|GO:0005975
Cca09g02730 496 Pfam X8 domain 359 429 IPR012946 -
Cca09g02730 496 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 4 484 - -
Cca09g02730 496 SMART X8_cls 358 443 IPR012946 -
Cca09g02730 496 Gene3D Glycosidases 21 347 - -
Cca09g02730 496 ProSitePatterns Glycosyl hydrolases family 17 signature. 256 269 IPR000490 GO:0004553|GO:0005975
Cca09g02730 496 Pfam Glycosyl hydrolases family 17 22 342 IPR000490 GO:0004553|GO:0005975
Cca09g02730 496 Gene3D - 352 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02730 Cca-Chr9 52993979 52999554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02730 19 437 Glycoside Hydrolase AT2G01630 76.611 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02730 K19891 - gmx:100820015 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02730 09 52993979 52999554 Cca09g02730 09 52993979 52999554 ECH