Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02711 ATGAGGTGCTCTTCGGAGACCATCAACATCGCTGCGAGTACGCAGAAGCTTGATGTCGATAATCGAATTGCTCTCCGCTTCTACTACAGGATCGCGGACAATATCCTCAAACAGGCTGATATCTTTCGTGCAGAGAAGAATATTGTTGATCTATATATCATGCTCCTAAGATTTTCTAGTTTGGTCTCTGAGACAATACCTCGTCACCGAGATTATAGATCATCTCCACAAGGGAAGAAAGAAGCTTTGAGAAAGAAATTGTTAAATTCTGTGAATGAGCTGGAGCAATTGAAACCAAAGGTGCAGCAGAAGATCAATGAGTTCAACAGCAGGCAAGCATATCTCCACAATGGGCGGGAAAAATGTCATTCAAATAATTTAATGGATTTTCCTCCAATGAAAAAGCAAAATTTGGCTAGTTATAATCAAATAAAGGCAGTCATACCAACCACTAGAGAGTTTTTTTACCATGGATCAAGGGGCCAGCAGTTTTCTAGTGTGAGGCCTGTGGAAGATAATATGAGGAGACTATCTCTAAGTCTCCCACGTCCAAAGGAGGAAACTCTCTCCAAGCATTCTATTCTAGGTCCCAATGGGCTGAAAGGGCAGTGGCGACCACCTGCAAGTGATAAAGGGGTCAGGTATCCAACCATCATAGATCTGTCTCCAGTTGAAATTCCAAGCCTTCAACAACCCTTGGAAGATGGATCTCTGAATAAAAAAGATAATAACATCTCAGAACAACATAGATCAGATTTAGAATCAATTCTTACCCAGAATGACGACTGCCAGGCAAAGCATGCTGATGAAGCTCCTTCTCTGATCTCTTTTGAAGCAACAGAAATCCCTGCTCAAATTGAAGTTACCAGACAGCCTTCTCCTCCACCTGTACTTGCGGAAGTACAAGATTTGGTTCCGGCTGTGTCACCTTTTGTTAATGAGGGAGGATGTAAGACAGAGATTCCGTCAGCAGAAAGTGTTGTTCGTGCTGAGTCTCCTCTGCAACTACACATTTCAACTTCTATGATGGAGAGTTTTATGAAGCTTGCCAAGTCAAACACTGACAAAAATTTAGAGACTTGTGGTATCCTTGCAGGTTTGCTTAAAAACAGAAAATTTTATATTACTGCTCTAATAATCCCAAAGCAGGAGGCAACATCCAGTTCTTGTCAAGCTACAAATGAAGAGGAGATATTTGAAGTGCAAGATAAGCAATCTCTTTTCCCCCTTGGGTGGATCCACACACATCCTACACAATCTTGTTTCATGTCATCAATTGATCTACACACTCATTACTCATATCAGATTATGCTGCCAGAAGCTGTTGCAATAGTTATGGCACCAACAGACAGTTCAAGAAACCATGGCATTTTTCGGTTGACAACCCCTGGTGGAATGTCGGTCATTAGACAATGCCAGCAACGTGGCTTTCATCCACATAATCAACCTCCAGATGGTGGTCCCATTTACGATACATGTACAGATGTTTACATGAACCCAAATTTAAAATTTGATGTCATTGATCTTCGATGA 1533 0.4149 MRCSSETINIAASTQKLDVDNRIALRFYYRIADNILKQADIFRAEKNIVDLYIMLLRFSSLVSETIPRHRDYRSSPQGKKEALRKKLLNSVNELEQLKPKVQQKINEFNSRQAYLHNGREKCHSNNLMDFPPMKKQNLASYNQIKAVIPTTREFFYHGSRGQQFSSVRPVEDNMRRLSLSLPRPKEETLSKHSILGPNGLKGQWRPPASDKGVRYPTIIDLSPVEIPSLQQPLEDGSLNKKDNNISEQHRSDLESILTQNDDCQAKHADEAPSLISFEATEIPAQIEVTRQPSPPPVLAEVQDLVPAVSPFVNEGGCKTEIPSAESVVRAESPLQLHISTSMMESFMKLAKSNTDKNLETCGILAGLLKNRKFYITALIIPKQEATSSSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPEAVAIVMAPTDSSRNHGIFRLTTPGGMSVIRQCQQRGFHPHNQPPDGGPIYDTCTDVYMNPNLKFDVIDLR 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02711 510 ProSiteProfiles MPN domain profile. 336 466 IPR037518 -
Cca09g02711 510 Coils Coil 84 111 - -
Cca09g02711 510 Gene3D Cytidine Deaminase, domain 2 318 510 - -
Cca09g02711 510 Gene3D - 1 126 - -
Cca09g02711 510 MobiDBLite consensus disorder prediction 181 211 - -
Cca09g02711 510 SUPERFAMILY USP8 N-terminal domain-like 22 121 - -
Cca09g02711 510 Pfam USP8 dimerisation domain 9 104 IPR015063 -
Cca09g02711 510 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 333 439 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca09g02711 510 SUPERFAMILY JAB1/MPN domain 335 466 - -
Cca09g02711 510 SMART pad1_6 335 463 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca09g02711 510 PANTHER AMSH-LIKE PROTEASE 4 510 - -
Cca09g02711 510 CDD MPN_AMSH_like 335 510 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Cca09g02711 510 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 4 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02711 Cca-Chr9 52779116 52788338 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02711 K11866 - gmx:100800636 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02711 09 52779116 52788338 Cca09g02711 09 52779116 52788338 ECH