Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02693 ATGAAGATTGGTTGTTGTTTTCCGGTGGCATCAATGAAATTCCTCTTCCCTGTGTGGCGCTTCTCATCCTCAAGACCCTATATGTCTCTCTCTTCTTCTTCTCCGTCTCGCATTATGTCCATTCAAAATTCTTCTTCCTCTTCAGTTTCCATATCAACTTCAACGGAATCCAAAGAGAAGAAGGAAACTTTACCTTGGTTAATTGTTGGACTCGGAAATCCTGGCAAAAAGTTCTCTGCCACCCGCCACAATGTGGGATTTGAGATGGTTGACACCATAGCTGAAGCTGAAGGGATATCTATGAGTTCTGTATCCTTCAAAGCCTTATTTGGAAAAGGTTTTATCAGTGACGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTCAAGTGGTGAATCTGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAACAAGTCCTTGTGATCTTTGACGACATGGATTTGCCTTTTGCAAAATTGCGGCTTCTACCAAAGGGGGGGCATGGAGGTCACAATGGAATGAAGAGTGTTATTAATCACTTTAAAGGGAATGTTTGTTTTCCCCGTTTAAGAATTGGCATTGGACGACCTCCCGGGAAATTGGATCCTGTAGCATTTGTTCTTCGCACATTCACTAAACAGGAAAGGGAAGAGTTGAATTTTACATTGCAAGATGGATTAGAAGCTGTGCGGATTCTTTTGTTTGATGGATTTGATAAAAGTGCAAATTTTGTCAATAGTGCCAAAAAGATAGAGCAAACAGGTTGA 780 0.4064 MKIGCCFPVASMKFLFPVWRFSSSRPYMSLSSSSPSRIMSIQNSSSSSVSISTSTESKEKKETLPWLIVGLGNPGKKFSATRHNVGFEMVDTIAEAEGISMSSVSFKALFGKGFISDVPVILAKPQTFMNSSGESVGAIVSYYKIPLKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINHFKGNVCFPRLRIGIGRPPGKLDPVAFVLRTFTKQEREELNFTLQDGLEAVRILLFDGFDKSANFVNSAKKIEQTG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02693 259 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 171 181 IPR018171 GO:0004045
Cca09g02693 259 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 78 91 IPR018171 GO:0004045
Cca09g02693 259 Gene3D - 50 253 IPR036416 GO:0004045
Cca09g02693 259 TIGRFAM pth: aminoacyl-tRNA hydrolase 67 248 IPR001328 GO:0004045
Cca09g02693 259 Pfam Peptidyl-tRNA hydrolase 67 248 IPR001328 GO:0004045
Cca09g02693 259 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 36 253 - -
Cca09g02693 259 PANTHER PEPTIDYL-TRNA HYDROLASE 36 253 IPR001328 GO:0004045
Cca09g02693 259 SUPERFAMILY Peptidyl-tRNA hydrolase-like 65 250 IPR036416 GO:0004045
Cca09g02693 259 Hamap Peptidyl-tRNA hydrolase [pth]. 65 243 IPR001328 GO:0004045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02693 Cca-Chr9 52560015 52563755 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02693 K01056 - gmx:100526866 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02693 09 52560015 52563755 Cca09g02693 09 52560015 52563755 ECH