Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02692 ATGTATGGCGGTGACGAAGTATCGGCAATAGTCATAGACCTCGGCTCGCACACATGCAAAGCCGGTTACGCCGGCGAAGATGCTCCCAAGGCCGTTTTTCCCTCCGTTGTTGGTGCAATTGATCAAATGGACATTGATGGAACTGGTGATGCTGACGAGAACTCGGGAGCCTCTGGGGATTTACAAAACAATGCCAAAAATAATGATTCTGACAAAACTAAGGGAAAATGCAAACTTTATGTAGGATCTCAGTCACTAGGATACCGCAGAGACTATATGGAGGTGCTGTCACCATTGAAGAATGGGGTTGTTGTTGACTGGAATATTGTAGACAACATATGGGATCATGCTTTGAGGGAATGCCTACTAGTTGATCCTAAAGAGCGTCCAATGCTACTTGCTGAACCATGTTCCAACACTCAAGAACAGAGAGAGAGGGCAGCAGAACTTATGTTTGAAAAATATAAAGTACCAGCATTGTTTTTGGCCAAGAATGCTGTTCTCACATCTTTTGCATCAGGGCGTGCCACCTCATTAGTTGTTGATAGTGGTGGTGGATCAACTACAGTTGTACCGGTACTTGATGGTTATGTTCTTCAAAAGGCTGTGATAACTTCTCCTATTGGAGGAGAATTTCTGACAGATTGCTTGATGAAAAGTTTGGAAGGCAAAGGTATCACAATAAGACCTCGGTATTCATTCAAGAAGAAGGAAATACGGCTTGGAAGTCTTCAGACTGTAGACCTTGATTTTCCACATACAACAGAAAGCTACAAACTCTACTCCCAGAGGGTGATTGCTAGTGACATCAAGGAATGTGTTTGCCGAACACCAGATTCTCCATATGATGAGAGTGCATATTCTAACATTCCCATGACTCCATACGAGCTTCCTGATGGCCAGATTATTGAAGTTGGATCTGACAGATTCAAGATTCCTGATATTCTTTTTAATCCATCACTGGTTCAGACAATACCTGGCATGGAGAGTTTTGCAGAAATTGCTCCTTCAATTCGTGGTCTTCCAAAAATGATTATAGAGAGCATTAATAAGTGTGATGTAGACATTCGTAGAGAACTATTCAGTACCATACTGCTTACTGGTGGTACAGCATCAATGCAACAATTGAAGGAACGCATCGAGAAAGACTTGCTAGAGGAGTCCCCTCAAGCTGCTAGAGTAAAGGTATTTGCTAGTGGAAATGCAACTGAAAGAAGGTTCAGTGTTTGGATAGGGGGGAGTATATTGGCTTCTCTTGGCTCCTTCCAGCAGATGTGGTTCTCCAAGTCTGAGTACGAAGAGCAAGGTGCTTCTTATATCCAAAGAAAGTGCCCTTGA 1338 0.4297 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDGTGDADENSGASGDLQNNAKNNDSDKTKGKCKLYVGSQSLGYRRDYMEVLSPLKNGVVVDWNIVDNIWDHALRECLLVDPKERPMLLAEPCSNTQEQRERAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVVPVLDGYVLQKAVITSPIGGEFLTDCLMKSLEGKGITIRPRYSFKKKEIRLGSLQTVDLDFPHTTESYKLYSQRVIASDIKECVCRTPDSPYDESAYSNIPMTPYELPDGQIIEVGSDRFKIPDILFNPSLVQTIPGMESFAEIAPSIRGLPKMIIESINKCDVDIRRELFSTILLTGGTASMQQLKERIEKDLLEESPQAARVKVFASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEQGASYIQRKCP 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02692 445 CDD NBD_sugar-kinase_HSP70_actin 97 203 - -
Cca09g02692 445 Pfam Actin 4 444 IPR004000 -
Cca09g02692 445 Gene3D - 1 181 - -
Cca09g02692 445 Gene3D - 182 384 - -
Cca09g02692 445 Gene3D Actin; Chain A, domain 4 210 323 - -
Cca09g02692 445 PANTHER ACTIN 2 444 IPR004000 -
Cca09g02692 445 MobiDBLite consensus disorder prediction 44 73 - -
Cca09g02692 445 PANTHER - 2 444 - -
Cca09g02692 445 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Cca09g02692 445 SUPERFAMILY Actin-like ATPase domain 174 444 IPR043129 -
Cca09g02692 445 Gene3D - 389 443 - -
Cca09g02692 445 SMART actin_3 7 445 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02692 Cca-Chr9 52547889 52556606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02692 1 444 Miscellaneous Gene Families AT3G53750 35.491 2.14e-90 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02692 K11340 - gmx:100819549 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02692 09 52547889 52556606 Cca09g02692 09 52547889 52556606 ECH