Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02399 ATGAGTCTCTCAAAGCTCTTGTTCTTTACTTTGGCTGTATGCCTCACTGCTTGCTCGCATGCAGCAAGGTTTGACATAAAAAACCAATGCCAGTACACTGTGTGGGCCGCGGCTGTGCCTGGCGGTGGCAGGCAATTAAACTCGGGCGAGTCGTGGGCCATTGACGTGGCGGCAGGAACGAAGGGGGCCCGCATCTGGGCCCGAACGGGATGCAGCTTCGACGGTTCGGGCCGCGGTCATTGCCAGACCGGTGACTGCGGGGGCCTGCTCCAGTGCCAAGCGTACGGTGCAGCTCCGAACACGCTGGCGGAATTCGGGCTGAACGGGTTCAACAATTTGGACTTCTTCGACATCTCCTTAGTGGACGGTTTCAACGTTCCGATGGACTTCAGCCCAACCTCGAACGGGTGCACAAAAGGCATCAGATGCAGTGCTGACATTAATGGAAAGTGTCCGAACGAGCTCAAGGCTCCAGGGGGTTGCAACAACCCATGTACTGTCTACAAAACCGACAATTACTGTTGCAATTCCGGTAACTGTGGGCCCACTCCTTTGTCGAAAttctttaaggataggtgcccccaagcttatagttaccctaaggacgatgctacaagcaccttcacttgccccggtggtaccaactatagggttctcttttgcccTTGA 669 0.4694 MSLSKLLFFTLAVCLTACSHAARFDIKNQCQYTVWAAAVPGGGRQLNSGESWAIDVAAGTKGARIWARTGCSFDGSGRGHCQTGDCGGLLQCQAYGAAPNTLAEFGLNGFNNLDFFDISLVDGFNVPMDFSPTSNGCTKGIRCSADINGKCPNELKAPGGCNNPCTVYKTDNYCCNSGNCGPTPLSKFFKDRCPQAYSYPKDDATSTFTCPGGTNYRVLFCP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02399 222 ProSiteProfiles Thaumatin family profile. 21 222 IPR001938 -
Cca09g02399 222 Pfam Thaumatin family 28 222 IPR001938 -
Cca09g02399 222 PANTHER THAUMATIN-LIKE PROTEIN 8 222 - -
Cca09g02399 222 PIRSF PR5 1 222 IPR001938 -
Cca09g02399 222 Gene3D Thaumatin 22 222 IPR037176 -
Cca09g02399 222 PANTHER OS03G0233200 PROTEIN 8 222 IPR001938 -
Cca09g02399 222 SUPERFAMILY Osmotin, thaumatin-like protein 22 222 IPR037176 -
Cca09g02399 222 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Cca09g02399 222 PRINTS Pathogenesis-related protein signature 42 51 IPR001938 -
Cca09g02399 222 PRINTS Pathogenesis-related protein signature 64 75 IPR001938 -
Cca09g02399 222 PRINTS Pathogenesis-related protein signature 77 106 IPR001938 -
Cca09g02399 222 PRINTS Pathogenesis-related protein signature 114 130 IPR001938 -
Cca09g02399 222 PRINTS Pathogenesis-related protein signature 212 221 IPR001938 -
Cca09g02399 222 SMART tha2 24 222 IPR001938 -
Cca09g02399 222 ProSitePatterns Thaumatin family signature. 77 92 IPR017949 -
Cca09g02399 222 CDD TLP-P 24 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02399 Cca-Chr9 49377460 49378363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02399 2 222 Receptor kinase-like Gene Family AT5G38280 36.032 3.74e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02399 - - gmx:100301882 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01781 06 33124140 33125185 Cca09g02399 09 49377460 49378363 PCT