Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02387 ATGGTTTTCATTCATGAAACCTTTAACATTGTATGTCACCCTGTAAACATGGTTTTGCTGCTCATCATTTTTCCGTGTTACCTGGTTTTCAAGATTCTCCACTTCATCGTAAGATCGGTGTTTAGTGAAAACGTTGCAGGAAAAGTGATACTAATCACTGGAGCCTCTTCTGGCATAGGCGAACATCTAGCATATGAGTATGCCAGAAGAGGAGCGCGTCTAGCACTTGTTGCAAGAAGAGAGAATCGACTCAAGGAGGTTGCTAGCAATGCCAAATTGCATGGATCCCCTGATGTGATCATCATTCCTGCAGATGTTTCAAATGCTCAAGATTGTAAACGATTTGTTGAATCAACAATCAAACACTTTGGACAATTGGATCATCTGGTGAACAATGCAGGAGTAGGTCTTCTCGGCTTGTTCGAAAAAACCCCTGATATCACTAATTTTACTCCTGTAATGGACATTAACTTCTGGGGTTCTGCATATGGCACTTACTTTTCAATCCCCCACCTCAGAAAAAGCAAAGGCAAGATCATAGCAATAGCTTCCTGTACTGGATGGTTGCCTGTTCCAAGGATGGCCATCTACAATGCGAGCAAAGCAGCAGTTATCAGCTTATATGAGACTCTGAGATCTGAATTGGGAAACGACATTGGTATAACTATAGTCACTCCAGGGCTGATTGGGTCAGAAATGTCGCAAGGGAAAGTCCTATCAAAAGAAGGCAAGATGGTTTTAGATCAACAAATGAGAGATATTCAAGTGAGTTTGATGCCCGTAAGATCAGTCACAGAGGCCGCCAAAGCAATCGTGAAAAGCGCATGCCGCGGGGATTCGCATTTGACGGAGCCAGCATGGTTTAGTACAATGTTCTATTGGAAGACATTATGCCCTGACTTGTTAGAATTTGTTAGTCGCATGTCACTAGTGTCGGGTTCTTCGGAGAGGGATACAGTTAGCAAGAAACTCCTTGATGTAACAAGCTTAAAGAAATATCTGTATCCCAAGTCAGTGAGAAATCCCAATCTCAAACCCAACTAA 1044 0.4253 MVFIHETFNIVCHPVNMVLLLIIFPCYLVFKILHFIVRSVFSENVAGKVILITGASSGIGEHLAYEYARRGARLALVARRENRLKEVASNAKLHGSPDVIIIPADVSNAQDCKRFVESTIKHFGQLDHLVNNAGVGLLGLFEKTPDITNFTPVMDINFWGSAYGTYFSIPHLRKSKGKIIAIASCTGWLPVPRMAIYNASKAAVISLYETLRSELGNDIGITIVTPGLIGSEMSQGKVLSKEGKMVLDQQMRDIQVSLMPVRSVTEAAKAIVKSACRGDSHLTEPAWFSTMFYWKTLCPDLLEFVSRMSLVSGSSERDTVSKKLLDVTSLKKYLYPKSVRNPNLKPN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02387 347 Pfam short chain dehydrogenase 48 237 IPR002347 -
Cca09g02387 347 PANTHER RETINOL DEHYDROGENASE-RELATED 1 339 - -
Cca09g02387 347 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 339 - -
Cca09g02387 347 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Cca09g02387 347 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Cca09g02387 347 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Cca09g02387 347 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 306 IPR036291 -
Cca09g02387 347 Gene3D - 35 314 - -
Cca09g02387 347 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Cca09g02387 347 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Cca09g02387 347 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Cca09g02387 347 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Cca09g02387 347 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Cca09g02387 347 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02387 Cca-Chr9 49261324 49262841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02387 43 234 Acyl Lipid Metabolism Gene Families AT1G24360 30.769 1.28e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02387 K22418 - gmx:100787835 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02387 09 49261324 49262841 Cca09g02387 09 49261324 49262841 ECH