Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02386 ATGCCCGTTCGCCGCCTCAGGCTCGATTCCGACTCCGACGAAGAACAACAACATCCACTTCAGCCACGTCCCGTCGAAATCTCcgacgacgacgatgacgacttcatcgacgtcgccgaTAGCCTCTCTCCTCCCTCTCCCGCCTCCGCCTGTCCAATCTCCGACCACCTCCGCCGCCTCGGACTGTCCCTCAGGCGTGACTGGCTCGCTTCCTGCCTTCTCCAACTCCAATCCTCCGTCGCCGCCTTCCAACGCCTCGACGCCGCCGCCAAAGCCAAGCTCTGCTTCGAGCACTTTCTCTTCGCCGACATGAACTCCTGCGGCGCCGGTGTACTCCCTCCCGACGTCGATTCCATGCACCTTCGGCTTCTCCCCGGTCCCTACGTGTTGCAGGTTGATGAAGTTATCAACATCTGTTGTCCTCTGCGAGGCAGATATGAAGCGGCACCTGCTGGACTCAAAAGGTGCCTCAAGTTGTCTATGACTGATGGCGTTCAGAGAGTCTTTGGAATGGAGTATAGGCCTATCAAAGCTCTTGAAGTTTGTGCATCTTCTGGTTCAAAGGTTGTCATCTCTAATGTACATGTGCGTCGCGGACTTCTGATGCTGGTCCCTGAAACCATTGTAATTTTGGGGGGATTGGTTGAGCAGCTGGATGCAGCTCGAAAACGGTTGGTTGAAGAAATAAATAAACCACCTAGGGGGAAAAGAACCAAAAACGGAGTGCTTCCTCCTTTAGCAACTAGAGCTACTCTTGCTGCATGGCCTTCAGGTGGAGTTGATGATCTTGGGCGCAGTGGCTTCATGCCACACGGTTCACATTCTGTCCAGGAAAACAATCAAGGTGCTAGCCTGAGCATGTCTGGCACTGGTAACAGCTTAACAACTGAAGATACTGTGTCCATGGGTGCACAAAATACTGCTTCTAATTCTATACTCCACATGGCATCCAATGCTGAGGCCATAAATATGAATATGCGTAGGGATAGTAATCCTGTTTCCCGTGTGAGTCCGATGGCTAACCAGCTCTCTTCTGTCATCTCAAAGGCTGAGGAGATGCATATAGATGCTGCTAACCTCACCAGGGAAACTTCTGTTGACAATCACACTTCTCACATGGATTCAAATGTTGCAGCAGCACATATGGACTCTGTTCATATAGCAAGAGAAAGTTATGCAGCTACCGAGTGCACTCCCATTGTTGAAAATGTTGAGACAGACAGGGATAGAACTCATGTAGCAACTGATAGTGCTCGTCTGAGAAGATCCTCCCCCGCCTTTTTAAATGTTGCAGCGACACATAAGGACACTGTTCATATAACAAGAGAAAGTTCTGTGGTTATGGAGTGCTCTCCCATTGTTGAAAATGTTGACACAGACAGGGATAGAACTCATCTAGCTACAGATACTGCTCATCCAAGAAGATCCTCCCCCACCATTTTAAACACTAGCGATGTCGACATGGTTGATGCCAGTGACCATCCACTCATTATGTCTGGAGACCAAGAGGTTCCTTTCACATACTTAGCTAGTTTGTCTGCCAAGTTGGCTGCAATGAAGGAGGGAGCTCCTTTTGTTCGGGGTAAAATCAAGTGCTTTTTGACTGGTGTAAAAGGATTCCAGTATAAGAAAAGGGCAACTTACGAGCTTCAGGCATATGTAGACGATGGTAGCCTTATTTCTGAAATCCTCATTGATCATGATGTGGTACAGAAAGGAATTGGTTATTCTCCTATGGAGGTAACCGCCGCTCTTTCTTCTCATGACACGAAAATTGTCCAACAAATGAAGGATACAATGCGTAAATTTCAAGCTTTTTTAGCGAACTTTGAGGGAATAATACTTGTGGAATTAAATAAAAAATCTTCCCTTCCCCTTGCACTAGAGATGAGTCAAGGCTGTCCTCAATCTGATGCATGGTTACTTCTGAGAAGGCTGAAGTCTCTTCACCCTCCACAAGTTCAAGAACATTTTTCTTCGGATCCAATTGAATTATCCCCATAA 2004 0.4661 MPVRRLRLDSDSDEEQQHPLQPRPVEISDDDDDDFIDVADSLSPPSPASACPISDHLRRLGLSLRRDWLASCLLQLQSSVAAFQRLDAAAKAKLCFEHFLFADMNSCGAGVLPPDVDSMHLRLLPGPYVLQVDEVINICCPLRGRYEAAPAGLKRCLKLSMTDGVQRVFGMEYRPIKALEVCASSGSKVVISNVHVRRGLLMLVPETIVILGGLVEQLDAARKRLVEEINKPPRGKRTKNGVLPPLATRATLAAWPSGGVDDLGRSGFMPHGSHSVQENNQGASLSMSGTGNSLTTEDTVSMGAQNTASNSILHMASNAEAINMNMRRDSNPVSRVSPMANQLSSVISKAEEMHIDAANLTRETSVDNHTSHMDSNVAAAHMDSVHIARESYAATECTPIVENVETDRDRTHVATDSARLRRSSPAFLNVAATHKDTVHITRESSVVMECSPIVENVDTDRDRTHLATDTAHPRRSSPTILNTSDVDMVDASDHPLIMSGDQEVPFTYLASLSAKLAAMKEGAPFVRGKIKCFLTGVKGFQYKKRATYELQAYVDDGSLISEILIDHDVVQKGIGYSPMEVTAALSSHDTKIVQQMKDTMRKFQAFLANFEGIILVELNKKSSLPLALEMSQGCPQSDAWLLLRRLKSLHPPQVQEHFSSDPIELSP 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02386 667 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 48 651 - -
Cca09g02386 667 MobiDBLite consensus disorder prediction 266 295 - -
Cca09g02386 667 Pfam RecQ mediated genome instability protein 60 224 IPR013894 -
Cca09g02386 667 MobiDBLite consensus disorder prediction 272 295 - -
Cca09g02386 667 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 48 651 - -
Cca09g02386 667 SMART DUF1767_2 54 147 IPR033472 -
Cca09g02386 667 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 505 646 IPR032199 GO:0000166
Cca09g02386 667 MobiDBLite consensus disorder prediction 1 26 - -
Cca09g02386 667 MobiDBLite consensus disorder prediction 1 33 - -
Cca09g02386 667 Gene3D - 103 229 IPR042470 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02386 K10990 - gmx:100803734 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02386 09 49256519 49260948 Cca09g02386 09 49256519 49260948 ECH