Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02382 ATGGATGCTTGTGTGAAACAGGAACTGTTGGAGACTCCTATTGTGACCGAGAGGAGGCCTCGAAACGCCGTCGTTTCGGTTCCTCCCCCGGGTTCGGTTATTGAACTTAGCAGCAGCGATTCCGATTCGGACTGCGATTTGGACAGCGTAGTCGCAAGCGTGGTGCGGACCGGTGACTCGGGAGAGAGTCCTTCCAAGAAGCGACGGACCAACGACGGCGCAGTGGTTTTGCCGGTTGGATTCCTCAGTCCTCTCCCGCCGGCGCCGCCTCCTTTGACGGCTGTGCTATCCTTGCCGGCGCCGGAGCGGGCTTCCAACTCGGCCTCGCGGCTCAACTCGAATACGAGTTTGACTGTGAATGGCAGCAAGCAGTTCTGGAAGGCTGGAGATTACGATGGTGCTCCTCCGGGTGGATCTGGATCTTCGACAGTGGGTATGGATCATGTCAGAGTTCACCCCAAGTTTTTGCACTCTAATGCTACGAGTCATAAGTGGGCGCTTGGAGCTTTTGCGGAACTTTTGGACAATTCATTGGATGAGGTTTGTAATGGGGCCACATATGCTAATGTAGATATGCTTATAAATAAGAAAGATGGCACCAGGATGTTACTGGTTGAAGATAATGGTGGTGGGATGGATCCTGATAAAATGCGCCAATGCATGTCGCTGGGGTATTCCGTGAAAAGCAAATTGGCAAATACAATTGGACAATATGGAAATGGCTTTAAAACAAGTACCATGAGACTTGGGGCTGATGTAATTGTATTTTCCCGATATCCTGGGAAAGATGGGAAAAGCTCTACACAAAGCATAGGGTTGCTGTCATACACATTTTTGAGGAGTACAGGGAAGGAAGACATTGTAGTACCCATGCTGGACTATGAAAGAAGAGGACAGGAATGGAATAAGATAATACGGACTTCTCTGGATGATTGGAATAAAAATGTTGAAACAATAGTGCAGTGGTCACCATTTTCTGATGAGGCTGATCTTCTTCGTCAGTTCAACTTGGTGAAAGATCATGGTACACGAGTAATTATATACAATCTTTGGGAGGATGATCAAGGTCAGCTGGAACTTGATTTCGATGCAGACCCACATGATATCCAAATAAGAGGTGTAAATCGAGATGAGAAAAACATACAGATGGCTAAAGAGTTTCCCAACTCTAGACACTTCTTGACCTATCGACATTCACTAAGGAGTTATGCCTCAATTTTATATCTGAGACTTCCTGTTGGCTTCCGAATTATTCTTCGTGGGAAAGATATTTTGCATCACAACATAGTGAATGATATGATGATGTCTCAGGAGGTGACCTACCGGCCACAATCTGCAGCTGATGGGCTTATAAAGGATTCAAATATGATTGCTGTTGTTACTATTGGATTTGTCAAGGACGCAGTTCACCACGTCGATGTCTCAGGATTTAATGTTTATCATAAGAATCGACTCATTAAGCCATTCTGGAGGATCTGGAATCCAGCTGGAAGTGGAGGGCGTGGGGTCATAGGAGTGTTGGAAGCCAATTTTGTTGAACCTGCCCATGATAAGCAAGGCTTTGAGCGTACTTTAGTTTTATCAAGACTGGAGTCTAAATTGATACAAATGCAGAAAAAATACTGGAGCACTAACTGCCATAAAATTGGTTATGCTTCCAATCGAAGTAAAATACTAATCAGAGATTCTGCTGATAAAGAGACATCTCCTGATTTGGTTCCAGAATTATCACAATCAAAAAGGAAATTTCCTACCATGGAAGGAAAGGCGACACAGTTGACATCAGACAAATTGTATTCACAGTCAAATCAGAAACGAATACAAAAACAAACAGAAAAATATAGTGCATATACCAATGGTCAAATTTCAGTCTCTCCTAAACGTAGAATACAAAGTTCATCTGAACAATCATCATCTGAAGATGATGTCAGTGATAATGGCATGCCTATGAAAAAATCTCAAACGAAATATATTGCTGAAAAATCATTTGAAAATGAGAATGGATGTTCTCAAGATACATCAATTGGAAAAGCCTCGCAGTACACACGGGGATCCAAACTAAAGGGAAAAGATGTAGATGATGGTGAGCAACCACTATCTGGCAATGATTTACTGACTCTAGAGCAATTGAAAAAAGAGAATCGTGAATTGAAGGAAAGATTGCAGAGGAAGGAGGAAGAAATTTTAGGGGACGTGTTGCAGGCTCTGCAAGTCGAGAAAGACAGGTGTAAATCTCTCGAAACTCAGCTCAATGATGCTGAAAAAAGAATTGAAGAGTTGAACAATGATCAAGAAACTCTGATTGATGTATTCTCTGAAGAGAGGGATAGACGTGATTCTGAAGAGAAAAGTTTGAGAAAGAAGTTGCAGGAGGCATCAAATACTATCGAAGAGCTTCTTGAGAAGATACGGATGCTTGAACGGAAGTCTTCAAGCGGCAGACTAGAACGATGA 2454 0.4303 MDACVKQELLETPIVTERRPRNAVVSVPPPGSVIELSSSDSDSDCDLDSVVASVVRTGDSGESPSKKRRTNDGAVVLPVGFLSPLPPAPPPLTAVLSLPAPERASNSASRLNSNTSLTVNGSKQFWKAGDYDGAPPGGSGSSTVGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYANVDMLINKKDGTRMLLVEDNGGGMDPDKMRQCMSLGYSVKSKLANTIGQYGNGFKTSTMRLGADVIVFSRYPGKDGKSSTQSIGLLSYTFLRSTGKEDIVVPMLDYERRGQEWNKIIRTSLDDWNKNVETIVQWSPFSDEADLLRQFNLVKDHGTRVIIYNLWEDDQGQLELDFDADPHDIQIRGVNRDEKNIQMAKEFPNSRHFLTYRHSLRSYASILYLRLPVGFRIILRGKDILHHNIVNDMMMSQEVTYRPQSAADGLIKDSNMIAVVTIGFVKDAVHHVDVSGFNVYHKNRLIKPFWRIWNPAGSGGRGVIGVLEANFVEPAHDKQGFERTLVLSRLESKLIQMQKKYWSTNCHKIGYASNRSKILIRDSADKETSPDLVPELSQSKRKFPTMEGKATQLTSDKLYSQSNQKRIQKQTEKYSAYTNGQISVSPKRRIQSSSEQSSSEDDVSDNGMPMKKSQTKYIAEKSFENENGCSQDTSIGKASQYTRGSKLKGKDVDDGEQPLSGNDLLTLEQLKKENRELKERLQRKEEEILGDVLQALQVEKDRCKSLETQLNDAEKRIEELNNDQETLIDVFSEERDRRDSEEKSLRKKLQEASNTIEELLEKIRMLERKSSSGRLER 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02382 817 MobiDBLite consensus disorder prediction 663 701 - -
Cca09g02382 817 MobiDBLite consensus disorder prediction 584 650 - -
Cca09g02382 817 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 168 270 - -
Cca09g02382 817 PANTHER PROTEIN MICRORCHIDIA 7 1 802 - -
Cca09g02382 817 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 168 366 IPR036890 -
Cca09g02382 817 Pfam Morc6 ribosomal protein S5 domain 2-like 398 542 IPR041006 -
Cca09g02382 817 MobiDBLite consensus disorder prediction 663 681 - -
Cca09g02382 817 MobiDBLite consensus disorder prediction 562 650 - -
Cca09g02382 817 Coils Coil 704 727 - -
Cca09g02382 817 MobiDBLite consensus disorder prediction 771 790 - -
Cca09g02382 817 Coils Coil 782 809 - -
Cca09g02382 817 Gene3D - 153 357 IPR036890 -
Cca09g02382 817 Coils Coil 736 770 - -
Cca09g02382 817 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 1 802 IPR045261 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02382 Cca-Chr9 49195414 49212551 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02382 - - gmx:100816702 1314.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02382 09 49195414 49212551 Cca09g02382 09 49195414 49212551 ECH