Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02380 ATGCCGGAAGAGGATTTGGTGGACATCAAGTTTAGGTTGTACGATGGCTCCGATATCGGACCCTTCAGGTACTCCTCCGCCGCTACCGTCGATATGCTCAAGCAAAGGATTGTCTCCGATTGGCCCAGAGGTAAAACAGTCATGCCAAAGTCAGCAAATGAAGTGAAACTGATTAATTCTGGTAAAATCTTGGAAAACAACAAGACTGTTGGTCAATGTAAAGTACCATTTGGTGGTGAGATTGCAGGGGGTGTTATAATAATGCATGTTGTTGTACAGCCATCTCTAGCAAAAACTAAAGCTGAAAAGAAGATTGATGATTCGCCCAAGAAGGTCGTCTGTTCCTGTTCCATATTGTGA 360 0.4361 MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRIVSDWPRGKTVMPKSANEVKLINSGKILENNKTVGQCKVPFGGEIAGGVIIMHVVVQPSLAKTKAEKKIDDSPKKVVCSCSIL 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02380 119 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Cca09g02380 119 SUPERFAMILY Ubiquitin-like 2 98 IPR029071 -
Cca09g02380 119 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 117 IPR039540 -
Cca09g02380 119 CDD Ubl_MUBs_plant 6 94 - -
Cca09g02380 119 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 119 IPR040015 -
Cca09g02380 119 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 3 1 119 - -
Cca09g02380 119 PIRSF MUB 1 119 IPR017000 -
Cca09g02380 119 Gene3D - 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02380 Cca-Chr9 49172871 49177833 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02380 - - gmx:100810070 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02380 09 49172871 49177833 Cca09g02380 09 49172871 49177833 ECH