Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02378 ATGACTCACGACCCTCGTTTGATTTTTGCTGCTGGACTTCTAGGGAACCTTGTCTCCTTCTGTTGCTTTCTAGCACCAGTACCAACATTTTATAGAGTTTGTAAGAAGAAAACCACGGAAGGTTTCCAATCACTTCCTTATGTGGCTGCACTCTTCACTTCAATGCTTTGGATTTTTTATGCCTACATAAAGACGGGCGAAATACTTCTCATCACCATCAATGCATTCGGATGTTTCATTGAGACAGTTTACCTTGTCATCTATATCACTTATTGCCCCAAGAAAGCAAGGTACTTTACCTTGAAGATGATTTTCTTGTTCAACGTTGGGGTGATTTTCTTGGTTATTCTTCTCACCCACGTTCTAGCAAAAGAACGCACAGCACGTATCGAGCTTCTTGGATGGATTTGTGTTGTCCTTTCTACCAGTGTGTTTGCAGCACCTCTGAGCATTATTAAAGTGGTTATTCGCACCAAAAGTGTTGAGTTCATGCCGATCACTCTCTCACTCCTCCTCACAGTAAGTGCAATTATGTGGATGGCATACGGTATTCTCCTGAGGGACATCTATGTTACACTTCCGAACTTTGTGGGTGTGACATTTGGAACAATTCAGATAGTGCTCTACTTAATATACAGAAAGAACAAGCCCGTGAAGGATGAAAAGGTGCCAGAACAGAAAGACGATGTTACCAACAATGACGAAAACGCTAACACTACTGCGAGTGATGGGAGTGGACTGGTTGATATCGAGCTTGGAGAGAAGAAGGAAGAGAAGCACGTTGAGAAAATAGAGAAAAAACAGGAGCAAGTTGTTAACGCTCGTGACCAAACACAACTCAACAATAATAGCAACAAAACAAGGGAAGGAACTCAGCTACGTGTAACAACATAA 894 0.4195 MTHDPRLIFAAGLLGNLVSFCCFLAPVPTFYRVCKKKTTEGFQSLPYVAALFTSMLWIFYAYIKTGEILLITINAFGCFIETVYLVIYITYCPKKARYFTLKMIFLFNVGVIFLVILLTHVLAKERTARIELLGWICVVLSTSVFAAPLSIIKVVIRTKSVEFMPITLSLLLTVSAIMWMAYGILLRDIYVTLPNFVGVTFGTIQIVLYLIYRKNKPVKDEKVPEQKDDVTNNDENANTTASDGSGLVDIELGEKKEEKHVEKIEKKQEQVVNARDQTQLNNNSNKTREGTQLRVTT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02378 297 Gene3D - 8 98 - -
Cca09g02378 297 MobiDBLite consensus disorder prediction 221 297 - -
Cca09g02378 297 Pfam Sugar efflux transporter for intercellular exchange 132 216 IPR004316 GO:0016021
Cca09g02378 297 Pfam Sugar efflux transporter for intercellular exchange 12 96 IPR004316 GO:0016021
Cca09g02378 297 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 5 289 - -
Cca09g02378 297 Coils Coil 257 277 - -
Cca09g02378 297 Gene3D - 128 223 - -
Cca09g02378 297 MobiDBLite consensus disorder prediction 249 272 - -
Cca09g02378 297 MobiDBLite consensus disorder prediction 273 297 - -
Cca09g02378 297 PANTHER RAG1-ACTIVATING PROTEIN 1 5 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02378 Cca-Chr9 49135030 49138392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02378 9 230 Miscellaneous Gene Families AT5G23660 53.913 7.11e-85 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02378 K15382 - gmx:100801430 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02378 09 49135030 49138392 Cca09g02378 09 49135030 49138392 ECH