Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02370 ATGGCAGAGATTCAGCCGCCGGAGGGGCAGATAAACGGCGGCGGAACCCTAATTCTCAATTCGTCGGAGCCTTCCATCGGATCCAAGCGGCAGCGGCCCCCGAGCGTCCGATTGGGCGACATCGGCGGAGACCAGCCCTACGACTCCCACGCGCGCCGCAACTCCAAGCCGTGGAAACTCGCCTTCGACGGCGGAcaccaccaccaccaccaccGTGGCGGCGGCAAGGAGAAGGGCCCAGGTAAACCCTCCAAGACTCGTCCTTTAACCAACTTGAGCGAGTTTAACGAAACCCTAGAACCCAACGACAGAGAGCCAGGGAACATCGACACCGTCGCAATTGGGAGCTGGAAGGTCAGAGAGTCCAAGAAGAGGGGCTCCGTCGCCACCAAGAGGGTCAGATCGAATTGGGTTTCCAGAATCGACGAGggcggcgacaacggtggcggcagcggtggcggcggcggcgagggggagGAAGAGGAGAAGTATAACGGAGATGGGGATGATGATGACGATGATGTTGACGGGTATCGGGAGTTTGAGGTGGAGAATTCGGAGAGTCCTTTGAAGGAACAAAGCCCTATTCATAGTGTGGAGAATTTGGGGGGTGATGGGAATAGGAGGGGATTTAAGGGTAGAGAACAGCAGCAGCAACAGCATGACGGGGTTGAGCTATCTGTGCCGTCTGATACTGATGTTAGGGCTTGGAAGTGTGGGGATAGGAATAATGAGAATGGTGGGAGAGTGAGGGGTGGTGAAGATGGGGTTAGGATTTGGCTCAATGGATTGGGATTGGGTCGTTATGCGCCTGTGTTTGAAGTGCATGAGGTGGATGATGAGGTTTTGCCCATGTTGACTCTAGAGGATCTCAAGGATATGGGGATTAGTGCTGTTGGGTCCAGGAGAAAAATGTACACTGCCATTCAGAAACTCGGGAAGGGCTTCTCCTGA 954 0.5031 MAEIQPPEGQINGGGTLILNSSEPSIGSKRQRPPSVRLGDIGGDQPYDSHARRNSKPWKLAFDGGHHHHHHRGGGKEKGPGKPSKTRPLTNLSEFNETLEPNDREPGNIDTVAIGSWKVRESKKRGSVATKRVRSNWVSRIDEGGDNGGGSGGGGGEGEEEEKYNGDGDDDDDDVDGYREFEVENSESPLKEQSPIHSVENLGGDGNRRGFKGREQQQQQHDGVELSVPSDTDVRAWKCGDRNNENGGRVRGGEDGVRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYTAIQKLGKGFS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02370 317 MobiDBLite consensus disorder prediction 14 29 - -
Cca09g02370 317 SMART SAM_4 249 315 IPR001660 GO:0005515
Cca09g02370 317 MobiDBLite consensus disorder prediction 1 227 - -
Cca09g02370 317 MobiDBLite consensus disorder prediction 46 62 - -
Cca09g02370 317 PANTHER - 18 317 - -
Cca09g02370 317 CDD SAM_superfamily 257 311 - -
Cca09g02370 317 Pfam SAM domain (Sterile alpha motif) 257 312 IPR001660 GO:0005515
Cca09g02370 317 ProSiteProfiles SAM domain profile. 252 315 IPR001660 GO:0005515
Cca09g02370 317 SUPERFAMILY SAM/Pointed domain 255 312 IPR013761 -
Cca09g02370 317 Gene3D - 252 312 IPR013761 -
Cca09g02370 317 MobiDBLite consensus disorder prediction 162 180 - -
Cca09g02370 317 PANTHER SCP160 18 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02370 Cca-Chr9 49066061 49068070 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02370 - - gmx:100802147 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02370 09 49066061 49068070 Cca09g02370 09 49066061 49068070 ECH