Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02360 tataaatataaatataaatGTCGTAACATTTTATCCCATTTCCTTCTTCCTCCCTCTTCGCCGGACCACGCCTTCTCTCTATCTTTCTCTGTTTTTTTTTTCTCTGCAACTCAATCGATTAGTTTCGCTTTCGCCATCAATTCAGGAATCATGGCTAGGGTTCTGGCTCAGTCTATTAGTATGCCTGGCCTGCTGAGTGGGCAAAGGCATGATCAGCATAAGGGATCAGGAAAACTAAAAAGATCTGTCAAAATGATGAGTAGCTTACGAGTGCCTGCATTAAGAATGTCTGGTTTCTCTGGATTACGTAGTCTTAATACTTTGGATTATCTGTCGAGGCCACGACAAAATTTCCACTCCAAGATGTTGACTACAACTTCTTCTCGCCGCGAAAGGGCGAAACGATGTGTACCTAAAGCAAtgtttgagcgtttcacggaaaaagcaataaaagtaattatgttagctcaggaggaagcaagacggctgggtcacaattttgttggaacggaacagattctattgggtcttattggtgaaggcactggtattgctgctaaggttctgaagtcaatgggaattaaccttaaggatgctcgagtagaagtggaaaagataattggaaggggtagtggatttgttgcagttgagattccatttactccccgcgcgaagcgtgttttggagctctcactggaGGAGGCTCGCCAACTTGgtcacaattatattggatctgagcacttgcttcttggtcttcttcgagagggtgagggtgtagcagcacgtgttcttgaaaatttgggtgctgatccaaataatattcgtgctcagGTTATACGCATGGTTGGTGAGGGTGCTGACAGTGTTGGAGCTACTGTTGGCCCTGGAAGTAGTAATAACAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACTAAGCTAGCAGAAGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTCACTCAAATTTTGGGTCGCCGAACCAAAAATAATCCATGTCTTATTGGAGAACCTGGTGTTGGGAAGACAGCTATTGCTGAAGGCCTTGCCCAAAGGATTGCAAATGGTGATGTTCCTGAAACAATAGAGGGAAAGAAGGTTATAACCCTTGATATGGGTCTACTGGTAGCTGGAACTAAATATCGAGGAGAATTCGAGGAGAGATTGAAGAAACTAATGGAGGAAATTAAACAAAGTGACGAGATAATACTTTTTATTGATGAAGTGCATACTTTAATTGGAGCTGGAGCAGCTGAGGGGGCAATTGATGCTGCAAACATATTAAAACCAGCTCTTGCCAGAGGTGAACTACAGTGTATAGGAGCCACAACACTGGATGAATATAGGAAGCACATTGAAAAGGATCCAGCTCTGGAGAGGCGATTCCAGCCAGTTAAGGTGCCAGAGCCAACTGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGCTATGAGATTCACCACAAGCTCCGTTATACAGATGATGCTCTTATAGCTGCTGCACAGCTGTCACACCAATATATTAGTGATCGATTTTTGCCCGACAAAGCTATAGATTTAATTGATGAAGCTGGTTCCCGAGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAGCTTGACAAGGAGGTCAGGCAGATTGTGAAGGAGAAAGAAGAAGCTGTTCGCAATCAAGACTTTGAGAAGGCTGGAGAGTTACGAGATAGAGAAATGGATCTTAAGACACAGATATCAGCACTTATAGAAAAGGGCAAGGAGATGAGCAAGGCAGAGAGCGAGGCAGGAGATGGAGGTCCATCGGTGACTGAAGTTGACATACAACATATTGTCTCCTCCTGGACTGGTATTCCTGTGGAGAAAGTCTCAACTGACGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACACAAGCGAGTCATTGGTCAGGATGAAGCAGTAAAAGCCATTAGCCGGGCTATCCGTCGAGCCAGGGTTGGACTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGGCCAACGGGTGTGGGTAAGTCTGAGTTGGCCAAAGCATTGGCTACATACTACTTTGGTTCGGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACGGTCTCCAAACTCATAGGTTCACCTCCTGGATATGTTGGTTACACTGAGGGTGGCCAACTTACCGAGGCAGTTCGGCGTCGTACACGGTTGTACTGTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGA 2331 0.3719 YKYKYKCRNILSHFLLPPSSPDHAFSLSFSVFFFSATQSISFAFAINSGIMARVLAQSISMPGLLSGQRHDQHKGSGKLKRSVKMMSSLRVPALRMSGFSGLRSLNTLDYLSRPRQNFHSKMLTTTSSRRERAKRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPNNIRAQVIRMVGEGADSVGATVGPGSSNNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALIAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKEKEEAVRNQDFEKAGELRDREMDLKTQISALIEKGKEMSKAESEAGDGGPSVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRTRLYCLMRLRKPILMYST 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02360 776 Coils Coil 556 576 - -
Cca09g02360 776 Pfam Clp amino terminal domain, pathogenicity island component 156 208 IPR004176 -
Cca09g02360 776 Pfam Clp amino terminal domain, pathogenicity island component 232 283 IPR004176 -
Cca09g02360 776 ProSiteProfiles UVR domain profile. 560 595 IPR001943 GO:0005515
Cca09g02360 776 CDD AAA 326 478 - -
Cca09g02360 776 Pfam ATPase family associated with various cellular activities (AAA) 348 464 IPR003959 GO:0005524|GO:0016887
Cca09g02360 776 Gene3D UVR domain 552 616 - -
Cca09g02360 776 Gene3D - 638 765 IPR027417 -
Cca09g02360 776 Gene3D - 141 288 IPR036628 -
Cca09g02360 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 758 IPR027417 -
Cca09g02360 776 PANTHER CHAPERONE PROTEIN CLPC2, CHLOROPLASTIC 103 759 - -
Cca09g02360 776 ProSitePatterns Chaperonins clpA/B signature 2. 720 738 IPR028299 -
Cca09g02360 776 Gene3D - 488 632 - -
Cca09g02360 776 CDD AAA 660 739 - -
Cca09g02360 776 Pfam AAA lid domain 486 587 IPR041546 -
Cca09g02360 776 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 735 753 IPR001270 GO:0005524
Cca09g02360 776 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 690 708 IPR001270 GO:0005524
Cca09g02360 776 Gene3D - 296 486 IPR027417 -
Cca09g02360 776 SUPERFAMILY Double Clp-N motif 143 283 IPR036628 -
Cca09g02360 776 Pfam AAA domain (Cdc48 subfamily) 685 749 IPR003959 GO:0005524|GO:0016887
Cca09g02360 776 SMART AAA_5 343 483 IPR003593 -
Cca09g02360 776 Coils Coil 397 417 - -
Cca09g02360 776 ProSitePatterns Chaperonins clpA/B signature 1. 438 450 IPR018368 GO:0005524
Cca09g02360 776 ProSiteProfiles Clp repeat (R) domain profile. 142 284 IPR004176 -
Cca09g02360 776 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 103 759 - -
Cca09g02360 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 580 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02360 Cca-Chr9 48959300 48965154 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02360 K03696 - gmx:100814891 1286.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00283 03 4219332 4225534 Cca09g02360 09 48959300 48965154 ECH
Cca09g02360 09 48959300 48965154 Cca09g02360 09 48959300 48965154 ECH
Cca09g02360 09 48959300 48965154 Cca03g00283 03 4219332 4225534 PCT