Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02281 ATGGGAAATGTAGAGTCAACACAAGATGTTCATGATGATGTTTCGTGGCAACACCCTTCCCATGATGGACGTTCCGAAAATACTAGCCATCAATATCATCAATCCTCTTCATATGCTGGGAGTTCAATGAATACTAGGCATCAACATAGGCAGCAACCCACATATATAGCTGACAATTTCAGTTCATTGGATCAGGTTGTGTCTGCTTTGAGAGAAGCTGGTCTGGAATCTTCGAATCTAATAATTGGAATTGACTTCACCAAAAGCAATGAGTGGACAGGCAAGCACTCCTTCAACCACAAAAGCCTTCATTCTGTTGGAAACACTCCTAATCCGTATGAGCAAGCAATCTCTATAATTGGCCGTACTCTATCTTCTTTCGATGAAGACAATCTGATACCATGTTTTGGATTTGGTGATGCATCCACACATGATCAGAATGTGTTCAGCTTTTATCCTGGTGATCGCTATTGTCATGGATTTGAGGAAGTACTGGCGCGCTACCGAGAGATTGTGCCACACTTAAAATTGTCAGGTCCAACATCGTTTGCCCCTGTAATTGACGCAGCAGTTGACATTGTGGAAAGAAGTGGTCAATATCATGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATTCAGATACACCACATGGAAAGTATAGTCCACAAGAACAAGCCACTATTGATTCTATCAGTGCAGCGAGTCACCATCCCCTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGAATGAAATGCAGCACTTTGACGATAACATTACTCAGCGCTTATTTGACAACTTTCAGTTTGTGAATTTCACAAAGATCATGTCTGAGAACAAAGATGCATCAAAGAAGGAAACAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTACCGTATAACCCAAAATCTACAAGTTGCCAATGAAAAATCAGTAAGTTATCAACGCAGAAGGCCTCTTCCTCCGCCTAAGGAAGTAATAGATCGTGACAATGCAGTCGTAGCAGTTCCACATGTGACAAATTTTGAATCAGTCGAGCCAACAGCTCCAGCTGCAGTAGATTCAGCATGCCCTATTTGCTTAACCAATCCGAAGGACATGGCTTTTGGATGTGGTCATACAACTTGCAAGGAGTGTGGCGTGACATTATCTTCATGCCCTCTGTGCCGGCAGCAAATTACAACTCGATTGAGACTATACACGTGA 1227 0.4222 MGNVESTQDVHDDVSWQHPSHDGRSENTSHQYHQSSSYAGSSMNTRHQHRQQPTYIADNFSSLDQVVSALREAGLESSNLIIGIDFTKSNEWTGKHSFNHKSLHSVGNTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQNVFSFYPGDRYCHGFEEVLARYREIVPHLKLSGPTSFAPVIDAAVDIVERSGQYHVLVIIADGQVTRNSDTPHGKYSPQEQATIDSISAASHHPLSIILVGVGDGPWNEMQHFDDNITQRLFDNFQFVNFTKIMSENKDASKKETAFALAALMEIPIQYRITQNLQVANEKSVSYQRRRPLPPPKEVIDRDNAVVAVPHVTNFESVEPTAPAAVDSACPICLTNPKDMAFGCGHTTCKECGVTLSSCPLCRQQITTRLRLYT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02281 408 CDD RING-HC_RGLG_plant 364 407 IPR045317 GO:0061630|GO:0070534
Cca09g02281 408 PANTHER COPINE FAMILY PROTEIN 1 34 407 - -
Cca09g02281 408 Pfam Zinc finger, C3HC4 type (RING finger) 361 402 - -
Cca09g02281 408 MobiDBLite consensus disorder prediction 29 51 - -
Cca09g02281 408 MobiDBLite consensus disorder prediction 1 51 - -
Cca09g02281 408 ProSiteProfiles Zinc finger RING-type profile. 364 397 IPR001841 -
Cca09g02281 408 SMART VWA_4 77 279 IPR002035 -
Cca09g02281 408 SUPERFAMILY RING/U-box 360 403 - -
Cca09g02281 408 SUPERFAMILY vWA-like 78 260 IPR036465 -
Cca09g02281 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG3 34 407 - -
Cca09g02281 408 SMART ring_2 364 396 IPR001841 -
Cca09g02281 408 Pfam Copine 102 313 IPR010734 -
Cca09g02281 408 MobiDBLite consensus disorder prediction 11 28 - -
Cca09g02281 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 408 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02281 Cca-Chr9 48031237 48040117 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02281 K16280 - gmx:100791316 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02281 09 48031237 48040117 Cca09g02281 09 48031237 48040117 ECH