Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02277 ATGGAATCAAGCACTATCATCGCTCCATCAAAAGAAATTAATGCTTTTGACTTCCATTTGATGCATAAGGTGCCTGAACAATTTATGTGGTCATCTAAAGCCTTAGAGAAAGGCAGTTCAGAAAAGCTGAATACACCCCTCATAGACTTGAAGGCCATTAAGGGTGATGAGGTTGCTATGGCTAATGCTGCAAAGCTTGTGAGGGAGGCTTGCATGAAGCATGGCTTCTTTGAAGTCACCAACCATGGTGTAGACTATGATTTCATCATTTCTACTTATCGGCAATGCGACTCCATTTTCAAGCTTCCCTTAAGCAAGAAGCTTAGTGCTATGAAAGATAAGTGGGGTTACTCGGTTGCTCATGCAGAGAAATTTTCTACCAATTTGCCATGGAAAGAGATGTTTACTTACCGATACAATTACATCCCCGCATCTGAATCACATGTTGTTGACTACTTCAAGTCTATGTTAGGAGAAGAATTTGAACGTGTTGGTTTGGCGAATCAGAAGTACTGTGAAGCTATGAAGGAGGTATCTGTGAGTATTCTAGAGTTATTAAGCATCAGTTTGGGTGTAGATCCTTTGTATTTACAAAAATATTTCGAAGATTGTGAAGCAATAATGAGGTGCAATCGTTACCCACGTTGCGAAAATCCTAGCATCACCCTTGGCGTTGGCCCTCATTGTGACCCAACTTCATTAACCATTCTTCATCAAGATCAAGTTTCAGGTCTTGAAGTTTATGTTGATGACAAATGGCTTCCTGTTCCTCCTCGACCTGAAACTCCCGATGCTTTAATCATAAACATAGGCGACACTTTGATGGCGATGACGAATGGGGTATACAAAAGTTGCGTACACAGAGTTTTGGTTAACAATAGGGTGGATAGAAAGTCCCTTGTTTTCTTCTTAAACCCAAAAGGAGACAAAACACTGACACCACCAAAAGAGTTACTTGAGAATGGAGAGCAAAGGAATTATCCTGATTTCACTTGGGCACAATTCTATGAGTTTACGCAAGAGCATCATAGGACTGATGCGGATACTCTTCCAATGTTCGTGTCATGGCTTCAAAATCAAAAGGCACTACCATCCAACTCCAAACCCCTTTGGAAGTAA 1119 0.4093 MESSTIIAPSKEINAFDFHLMHKVPEQFMWSSKALEKGSSEKLNTPLIDLKAIKGDEVAMANAAKLVREACMKHGFFEVTNHGVDYDFIISTYRQCDSIFKLPLSKKLSAMKDKWGYSVAHAEKFSTNLPWKEMFTYRYNYIPASESHVVDYFKSMLGEEFERVGLANQKYCEAMKEVSVSILELLSISLGVDPLYLQKYFEDCEAIMRCNRYPRCENPSITLGVGPHCDPTSLTILHQDQVSGLEVYVDDKWLPVPPRPETPDALIINIGDTLMAMTNGVYKSCVHRVLVNNRVDRKSLVFFLNPKGDKTLTPPKELLENGEQRNYPDFTWAQFYEFTQEHHRTDADTLPMFVSWLQNQKALPSNSKPLWK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02277 372 PANTHER GIBBERELLIN 20 OXIDASE 2 15 359 - -
Cca09g02277 372 SUPERFAMILY Clavaminate synthase-like 19 344 - -
Cca09g02277 372 Pfam non-haem dioxygenase in morphine synthesis N-terminal 46 140 IPR026992 -
Cca09g02277 372 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 15 359 - -
Cca09g02277 372 Gene3D - 6 338 IPR027443 -
Cca09g02277 372 Pfam 2OG-Fe(II) oxygenase superfamily 205 306 IPR044861 -
Cca09g02277 372 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 204 306 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02277 Cca-Chr9 48003770 48005681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02277 36 337 Glycosyltransferase AT5G59530 28.616 7.25e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02277 K05282 - lang:109358773 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02277 09 48003770 48005681 Cca09g02277 09 48003770 48005681 ECH