Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02270 ATGCTTCCTCGCTCTCCTTCTTCCTTCGGGAACGCCTTCTTTCTTGTGGGTCATCGTGTTTTGGACATAAGAGTGTGTAATGGTAGCTTATTCCGTAAGAGTCAGAGATGTTTCGGAGCGTCCATTTCGTGTTCGGGCGGTGTCAGGAACCAATCTATTGTGCCTTCTATTGAGCAACTAAGCGATGCACGGGTTATATACTCTGTCGCTCCATCTATGGGCCACAACCAGGAGTCTCATCCAGAATCACATTTTAGAGTTCCTGCGATTGTGAATGCTCTAGAGGAAATGCAGCTTACTTACAAGTTCCGTGGCTCTGAGGTAATTGAACTTCAACATTTTGAGCCTGCTTCAGTAGACGATATTGCAAGTGTGCATGCAAAAGCCTATGTTTCTGGGCTTGAAAAGGTTATGGACCAAGCTGTGGAGAAGGGCCTTATTTTCGTTGATGGTTCTGGACCAACATATGCCACTGCCACTACCTTCCAGGAGTCAATAATTGCAGCTGGCGCTGGATTAGCCTTAGTTGACTCAGTGGTTGCAGCTTCAAAGATAAAGAGAGATGCACCCACTGGTTTTGCTCTGATAAGACCGCCAGGACATCATGCTGTTCCACAAGGACCTATGGGCTTCTGCATTTTTGGAAATGTGGCCATTGCAGCCCGTTATGCTCAGCGTGTTCATGGACTGAAGCGTGTGTTCATAATTGACTTTGATGTTCATCATGGGAATGGAACGAATGATGCTTTCTATACTGATCCGGATGTATTTTTCCTTTCTTTTCATCAAGATGGAAGCTATCCAGGTACTGGTAAATTTGATGAGGTGGGTAGTGGAGACGGTGAAGGAACCACACTAAATCTGCCTCTTCCTGGAGGCTCTGGTGATACTGCTATTAGAACTGTGTTCGATGAAGTCATTGTACCATGTGCTCAAAGATTTCAACCAGACATAATTCTCGTTTCTGCTGGATATGATGGCCACGTGTTGGATCCACTTGCTAATCTTCAATACACAACTGGAACATATTACATGCTAGCGTCCAGTATTAAACAACTAGCGAAAGACTTATGTGGTGGCCGATGTGTGTTTTTCTTGGAGGGAGGGTATAATCTGAAGTCTCTTTCATATTCCGTGGCAGACACATTCCGTGCTCTTCTTGGGGATCCAAGCTTGGCATCTGAGTTTGATGACCCTAACATTTTGTACGAAGAGCCATCCACAAAAGTTAAGCAAGCTATTCAGAGGATAAAACACATTCATTCCCTGTGA 1272 0.4481 MLPRSPSSFGNAFFLVGHRVLDIRVCNGSLFRKSQRCFGASISCSGGVRNQSIVPSIEQLSDARVIYSVAPSMGHNQESHPESHFRVPAIVNALEEMQLTYKFRGSEVIELQHFEPASVDDIASVHAKAYVSGLEKVMDQAVEKGLIFVDGSGPTYATATTFQESIIAAGAGLALVDSVVAASKIKRDAPTGFALIRPPGHHAVPQGPMGFCIFGNVAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDAFYTDPDVFFLSFHQDGSYPGTGKFDEVGSGDGEGTTLNLPLPGGSGDTAIRTVFDEVIVPCAQRFQPDIILVSAGYDGHVLDPLANLQYTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDPSLASEFDDPNILYEEPSTKVKQAIQRIKHIHSL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02270 423 CDD HDAC_classII 80 387 - -
Cca09g02270 423 PANTHER HISTONE DEACETYLASE 14 34 422 - -
Cca09g02270 423 Gene3D Histone deacetylase domain 54 422 IPR037138 -
Cca09g02270 423 SUPERFAMILY Arginase/deacetylase 76 391 IPR023696 -
Cca09g02270 423 Pfam Histone deacetylase domain 80 385 IPR023801 -
Cca09g02270 423 PANTHER HISTONE DEACETYLASE 34 422 - -
Cca09g02270 423 PRINTS Histone deacetylase superfamily signature 198 221 IPR000286 -
Cca09g02270 423 PRINTS Histone deacetylase superfamily signature 232 247 IPR000286 -
Cca09g02270 423 PRINTS Histone deacetylase superfamily signature 316 326 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02270 Cca-Chr9 47919999 47927258 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02270 - - gmx:100788664 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02270 09 47919999 47927258 Cca09g02270 09 47919999 47927258 ECH