Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02253 ATGGCTTCTAACATCTTGTATCTATTTCTCCTCTTGCTAGCACACCTTCAAGCAGAGGCATTTGTGAAAGGAGACGCCACTCTGATAAAGAAAACATGCAAGAGCAGCAAGTACTACGATCTGTGCTTTTCCTCCCTGAAATCCGATCCAAGCAGTGCAAACGCAGACCCAAAGGGGTTGGCAGTGATCATGGTTGGAATTGGAATAACCAATGCCACTTCCACTTCTTCCTACTTGTCCTCTCACTTGCTTGGCACTGCCAACGACTCCACCTTGAAGAGGGGGCTGAAGGAGTGTGCATACAAATACGCATGTGCCAGCGATGCCCTCCAATCTTCTGCACAGGATTTGGCTAGTGAGGCTTATGACTATGCTTCCATGCACATCACTGCAGCCTCTGATTACCCCAATGTTTGTCACAACTTGTTTAAAGGCTACCCTGGTTTGGTTTATCCTCCTGAGATTGCTCCTAGAGAGGATGGTTTGAAGCGTTTGTGTGATGTTGCTTTGGGGATTGTTGAGAATCTTACTTGGAAATGGTAG 543 0.4678 MASNILYLFLLLLAHLQAEAFVKGDATLIKKTCKSSKYYDLCFSSLKSDPSSANADPKGLAVIMVGIGITNATSTSSYLSSHLLGTANDSTLKRGLKECAYKYACASDALQSSAQDLASEAYDYASMHITAASDYPNVCHNLFKGYPGLVYPPEIAPREDGLKRLCDVALGIVENLTWKW 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02253 180 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Cca09g02253 180 CDD PMEI_like 33 175 - -
Cca09g02253 180 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 177 IPR035513 -
Cca09g02253 180 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 176 IPR035513 -
Cca09g02253 180 SMART PMEI_2 24 172 IPR006501 GO:0004857
Cca09g02253 180 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 176 - -
Cca09g02253 180 PANTHER CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2 9 176 - -
Cca09g02253 180 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02253 Cca-Chr9 47759020 47759756 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02253 - - vra:106768612 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02253 09 47759020 47759756 Cca09g02253 09 47759020 47759756 ECH