Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02252 ATGAAGGGTGGTACGGTTCAGATTAGCTGGCACGAGAGCAAACCCGTCCTAACCCTCGATTTTCACCCTCTCTCCTCCACTCTCGCCACCGCCGGCGCCGATTTTGACATCAAGTTTTGGTCAATAAAACCCGCGGGAGCACAGAAGAAGCTTCCCGTAGTTTCCTATCTTAGTAACCTCTCTTACCATTCTTCTGCGGTCAATGTTATTCGCTTCTCTTCTTCCGGGGAATTGCTAGCCTCTGGTGCTGATGGAGGGGACCTTATAATATGGAAGCTACATTCTACTGATGCTGGTCAGACATGGAAGGCTCTCAAGACTTTAAGATCACATCACAAGGACATTCTAGACCTGCAGTGGTCTACCGATGCTGCGTATATCATATCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACATTGGATGCCCATGCACACTATGTTCAGGGGGTTGCATGGGACCCTCTGGGAAAGTATGTCACTTCTCTTAGTTCTGACAGGACTTGCCGAATTTACATCAACAAGCCTCTTAAATCAAAGGGCGTTGAGAAAATCAATTATGTTTGCCGGCAAGTCATTTCCAAGGCAGATCAGCCATTATTAAAGAATTCTAAGGAGACAAAATTTCATCTCTTCCATGATGAGACGTTGCCATCTTTCTTCAGAAGATTAGCATGGTCTCCTGATGGTTCATTTCTACTTGTGCCTGCAGGCTCTTACAAAATTAATACTGCATCTGAATCTGTGAATGCAGCTTACATATTTTCTAGAAAAGATCTTTCTAGGCCTGCTATACAGCTTCCCTGTGCAAGCAAAGCTGTTGTAGCTGTCCGGTTCTGCCCCATATTTTTTAAACTTCGGGGAATGAACTCAGCTGGGTTATTTAAGCTCCCATATCGCATCATATTTGCTGTGGCCACTTTGAATTCATTGTACATTTATGATACGGAGAGCACCTCTCCAATTGCTATATTAGCTGGTCTTCACTATGCTGCAATAACAGATATTACCTGGTCATCTGATGCTCATTATTTGGCATTGTCGTCACAAGATGGCTTCTGCtctttagtggaattcgaaaatgatgagctcggatcaccttactctttatcagAAGGAAATGTATCAAACAGTGATAGTAAAGGCACTGTACAGACAGTCGATAACACTGTCACTGTATCAACTAGGAATGTTAGTGCAGTTCTAGCAGAGAGCAAAAAAATGGATTCAGAAGAGAAGGCTGATGACATGGTCATTGAAGCATCTGGGAATATTGGGGCTGTCAGAACAGAAAGCGGGACAACTGTAACACAAGAGAATGAGACAACCGGGATTGTGGAAGCGGTTAGAGAAAATAGTAGGGAAAATAAATCAGAAGAGAAAACTGATGACATGGTTATTGAAACAACTGGAAGTATTGGTGCTGCTGAATTAGATTGTAGAAAAGCTGAACCAGAAGGTAAGGGAGAGAAAGAACCACGGAATTTGGGTACTGTAAATTTTGGAGTACAATACAAGGCAGAGAAACAGCCAGCTAATCCAGATCTAGATGTTAAACAAACGGAAGCGAAGGAGAAGACAGAGAAACTGCAATCAAGTTTAGATAGTATAAAATCAGGGCCAGAAGAAAAGGCAGGGCAACAATTGTCCAGTTCGAAGAGTACACCCACTTCAAATAAGCCAGCCAGGAAGCGTATCACTCCTATTGCCATTGATCCATAA 1749 0.4157 MKGGTVQISWHESKPVLTLDFHPLSSTLATAGADFDIKFWSIKPAGAQKKLPVVSYLSNLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKLHSTDAGQTWKALKTLRSHHKDILDLQWSTDAAYIISGSVDNCCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYVTSLSSDRTCRIYINKPLKSKGVEKINYVCRQVISKADQPLLKNSKETKFHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKINTASESVNAAYIFSRKDLSRPAIQLPCASKAVVAVRFCPIFFKLRGMNSAGLFKLPYRIIFAVATLNSLYIYDTESTSPIAILAGLHYAAITDITWSSDAHYLALSSQDGFCSLVEFENDELGSPYSLSEGNVSNSDSKGTVQTVDNTVTVSTRNVSAVLAESKKMDSEEKADDMVIEASGNIGAVRTESGTTVTQENETTGIVEAVRENSRENKSEEKTDDMVIETTGSIGAAELDCRKAEPEGKGEKEPRNLGTVNFGVQYKAEKQPANPDLDVKQTEAKEKTEKLQSSLDSIKSGPEEKAGQQLSSSKSTPTSNKPARKRITPIAIDP 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02252 582 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Cca09g02252 582 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Cca09g02252 582 Pfam WD domain, G-beta repeat 60 92 IPR001680 GO:0005515
Cca09g02252 582 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Cca09g02252 582 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Cca09g02252 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Cca09g02252 582 MobiDBLite consensus disorder prediction 521 541 - -
Cca09g02252 582 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Cca09g02252 582 MobiDBLite consensus disorder prediction 459 582 - -
Cca09g02252 582 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Cca09g02252 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Cca09g02252 582 MobiDBLite consensus disorder prediction 542 571 - -
Cca09g02252 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Cca09g02252 582 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 581 - -
Cca09g02252 582 SMART WD40_4 3 41 IPR001680 GO:0005515
Cca09g02252 582 SMART WD40_4 327 367 IPR001680 GO:0005515
Cca09g02252 582 SMART WD40_4 53 92 IPR001680 GO:0005515
Cca09g02252 582 SMART WD40_4 143 182 IPR001680 GO:0005515
Cca09g02252 582 SMART WD40_4 101 140 IPR001680 GO:0005515
Cca09g02252 582 MobiDBLite consensus disorder prediction 488 502 - -
Cca09g02252 582 Gene3D - 228 431 IPR015943 GO:0005515
Cca09g02252 582 Gene3D - 4 193 IPR015943 GO:0005515
Cca09g02252 582 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 43 IPR001680 GO:0005515
Cca09g02252 582 MobiDBLite consensus disorder prediction 459 475 - -
Cca09g02252 582 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 581 IPR045145 GO:0006335
Cca09g02252 582 SUPERFAMILY WD40 repeat-like 13 398 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02252 25 181 Miscellaneous Gene Families AT5G08390 25.478 1.55e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02252 K10751 - gmx:547606 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02252 09 47752935 47757723 Cca09g02252 09 47752935 47757723 ECH