Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02239 ATGGACGCGGAGCTTAGGGCGGCCAAAGCTGCTTACCGGAACGCCAAGGCCGAGGGAAACCACCGGGAGGAGGCGCGGTGGGCCAACGTCATCGGCGACATTCTGAAAAACCGAGGAGAGTACGTCGAGGCTCTCAAATGGCTTCGAATCGATTACGAAATTTCGCTCAAACATTTACCTGAGAAGCACTTGCTCCCAACCTGCCAATCCCTCGGCGAAATCTACCTCCGTCTCGAACACTTCTCCGACGCCCTAATTTACCAGAAAAAGCACCTGGAGCTTGCGAGGGACGCCAACGACGTCGTCGAGCAGCAGAGGGCGAGCACGCAGCTCGGCCGAACATACCACGAACTGTTCTCGCGATCGGAACACGACCACAACTCGATTCGCAACGCTAAGAAGTACTTCAAGTGCGCGATGGATCTCGCAGTGAGTCTCAAGGAGAATCCTCCGAATGCCAAGTCTTCTTTCCTCAAGGAGTACGTCGACGCGCACAACAACATTGGCATGCTGGAGATGGATCTCGACAACTTGCATGAGGCGCGGAAGATCTTGACCAGAGGATTGGATATTTGTGATGAAGAGGAGATCGGTGAATACGATGACGGCCGTAGTAGACTCCACCACAACCTTGGCAATGTGTATATGGAACTTAGGGTTTGGGATGAAGCTAGGAAACACATTAAGAGGGATATTATGATTTGTAACAGAATTGGACATATTCAAGGGGAAGCCAAGGGCTATATTAATCTTGGAGAAGTGCATTACAGGACTCAGAAATACGAAGATGCAAGGGCTTATTATGAGAAGGCGCTTGGTTTGGCGAAGAGCTTGGAGGATGAGGATGCTTTGGTTAGACAAATTGAGCAGAATATTGAAACTGTGAGAGAAGCTGTCAAGGTAATGGCTGATATAAAGAAAGATGAACAGAGCCTTAAGAAGCTCAAAAGAGATATAGCCTCTGCCAGAGGGACGCCACATGAGCGCAAATGCTTGCTGCAGCAGAATGTGGTTCTTGAACGCCTTGTTGAGAAAGCAAGGATGATCTTTGCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAGCTGAACTCTGTGATAGACAGAGGTTGGGTGATTCATATTTGGATGTTGCTGAGTCATACCAGAAGCTTAGAAAATTCAACAAGGCAATCAAATGGTACAAAAAGAGCAGGGAAATGTACAAAGCAATTGGTAACTTAGAGGGGCAAGCACTGGTGAAAATTAATATTGGAAATGTTTTGGATTCTACTGAAAATTGGAGAGAAGCATTGGATGCATTTCATGATAGCTACAGTATTGCTGTTGATGCAGACCTTCCTGATGTGCAACTCTCTGCCTTGGAAAATATGCATTATAGCAACATGCTAAGATTTGATGACGAGAATGAGACCAGGAGGTTGAAGCTTCTAATTGATAAGCTGAAGAAGTCGGAAGAAAAAGAGGCAGAAGCTAAAAGTATGCAAGAGGATTGTTGCTCTGAAACTGATACTGAAGCAGATGATTATCTGTCAAATAGTGGGTCTGATGATTTTTGCTCTGCAAAGACAAATTCTCGATCAAAATCTCTGACTACTGGAGAAGAATTGAAAGATGATGCATCTCTTATGTCACTCTATCAGTCCATAAAAGGCTCATCCAAAAAGAAAGCAGGCCACAAAGAAAGTCTTACAAACTCTACCAAGCCAGATGAGCAATCACCCAGGAGTCTGAACATTCAAACCAATGATCATCAGACAGTTGTTGGTCGTAAACGTGTCCGTGTAATTCTTTCtgatgatgatgatgatgaCAATGTGGAGTGTTCAAGCAGAAAGGATCATGATTGCTTGGTAGAGGACTTGCCCACTTATGATGCAATTAAGAGTAAAGCCAGTCCTTGTAAAATTCAGGTTATCTCAGAGTATGGATCCAAGAGTGCAATTAATGTTGAAGAAAGTAGTAGTTCTTTCAAATGCTGGAGTCCACATACAGCGAGTAAAATTGGCAGACAATCCAGGTCTTTGAGCAATGATATAGTTGCTGAAGCTGATTTTCCTAGTGGTTCTAAATGTAACACAGATGTCTCTGGCAAACAAAATGATATTGCTCATGCCATATTGCATCATTCCCAAAACGAGCACCAGCAATATATTACATGCCGGATTGGGAATGATCTAATACAAGTAGAAGCAACCTTGTGTACCACTGGTGATCAGTTGAACATTGACTCTTTGAAGGCCGCGGTTGCATGCTCATATTATCTACAATTTCCAACTGAAAAGAGATCAGAGGGTCTGTTGCCCATTATTGAGCACGTAAAATGTGCCGGAAGAGATCTAGAATCCCTGGAAACTGTTGAACATCTTAAGGAAGTTCTGGGAGATGACATGGTTGAAGCTTCTGTTGATGGATGGATTCACAAGCGCCTGATAAAAAGTTATGTAGACTGCTGCAAGGAGTTGTCTGAGGTACCAAACATCAAGGTGCTGAAGAAGCTTTACAATTTAGAGGTTTCAGATGACGAAATTGTTGTGTCTGACTGTGACCTGCAAGATTTGTCTATTACGCCGTTGATAAATGCACTTCATTCCCAAAAGTCATTTGCAATGCTTGACCTCTCTCACAATTTGTTAGGAAATGGAACAATCGAGAAACTTCAAAAGGTATTCACAGCATCAGGCCAATCTTATGGTGGCTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCGACAACATTGTTTCAGATTTGTGAATGTTCACTGCTGTTTGCTCGACTAGAAGTGCTTAACATTTCTGGAAACCGTCTTACCGATGCATGTGGATCTTATCTTTCAACAATCTTAAAAAACTGTACAGGTAAGCTGCATGACTTGAAGCTCTCCCAATTTTAA 2910 0.4326 MDAELRAAKAAYRNAKAEGNHREEARWANVIGDILKNRGEYVEALKWLRIDYEISLKHLPEKHLLPTCQSLGEIYLRLEHFSDALIYQKKHLELARDANDVVEQQRASTQLGRTYHELFSRSEHDHNSIRNAKKYFKCAMDLAVSLKENPPNAKSSFLKEYVDAHNNIGMLEMDLDNLHEARKILTRGLDICDEEEIGEYDDGRSRLHHNLGNVYMELRVWDEARKHIKRDIMICNRIGHIQGEAKGYINLGEVHYRTQKYEDARAYYEKALGLAKSLEDEDALVRQIEQNIETVREAVKVMADIKKDEQSLKKLKRDIASARGTPHERKCLLQQNVVLERLVEKARMIFAWEKHCEFAKEKKKIAAELCDRQRLGDSYLDVAESYQKLRKFNKAIKWYKKSREMYKAIGNLEGQALVKINIGNVLDSTENWREALDAFHDSYSIAVDADLPDVQLSALENMHYSNMLRFDDENETRRLKLLIDKLKKSEEKEAEAKSMQEDCCSETDTEADDYLSNSGSDDFCSAKTNSRSKSLTTGEELKDDASLMSLYQSIKGSSKKKAGHKESLTNSTKPDEQSPRSLNIQTNDHQTVVGRKRVRVILSDDDDDDNVECSSRKDHDCLVEDLPTYDAIKSKASPCKIQVISEYGSKSAINVEESSSSFKCWSPHTASKIGRQSRSLSNDIVAEADFPSGSKCNTDVSGKQNDIAHAILHHSQNEHQQYITCRIGNDLIQVEATLCTTGDQLNIDSLKAAVACSYYLQFPTEKRSEGLLPIIEHVKCAGRDLESLETVEHLKEVLGDDMVEASVDGWIHKRLIKSYVDCCKELSEVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGTIEKLQKVFTASGQSYGGLTLDLHCNRFGPTTLFQICECSLLFARLEVLNISGNRLTDACGSYLSTILKNCTGKLHDLKLSQF 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02239 969 SUPERFAMILY TPR-like 161 444 IPR011990 GO:0005515
Cca09g02239 969 Coils Coil 278 298 - -
Cca09g02239 969 Pfam Tetratricopeptide repeat 379 445 - -
Cca09g02239 969 Pfam Tetratricopeptide repeat 205 276 - -
Cca09g02239 969 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Cca09g02239 969 SUPERFAMILY RNI-like 835 966 - -
Cca09g02239 969 MobiDBLite consensus disorder prediction 490 504 - -
Cca09g02239 969 SUPERFAMILY TPR-like 13 153 IPR011990 GO:0005515
Cca09g02239 969 MobiDBLite consensus disorder prediction 555 590 - -
Cca09g02239 969 ProSiteProfiles TPR repeat region circular profile. 245 272 - -
Cca09g02239 969 Gene3D Ribonuclease Inhibitor 776 968 IPR032675 -
Cca09g02239 969 MobiDBLite consensus disorder prediction 572 590 - -
Cca09g02239 969 PANTHER PROTEIN TONSOKU 2 965 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Cca09g02239 969 MobiDBLite consensus disorder prediction 490 539 - -
Cca09g02239 969 Coils Coil 305 325 - -
Cca09g02239 969 Gene3D Tetratricopeptide repeat domain 320 471 IPR011990 GO:0005515
Cca09g02239 969 MobiDBLite consensus disorder prediction 510 535 - -
Cca09g02239 969 SMART tpr_5 65 98 IPR019734 GO:0005515
Cca09g02239 969 SMART tpr_5 376 409 IPR019734 GO:0005515
Cca09g02239 969 SMART tpr_5 416 449 IPR019734 GO:0005515
Cca09g02239 969 SMART tpr_5 205 238 IPR019734 GO:0005515
Cca09g02239 969 SMART tpr_5 245 278 IPR019734 GO:0005515
Cca09g02239 969 SMART tpr_5 162 195 IPR019734 GO:0005515
Cca09g02239 969 Coils Coil 479 499 - -
Cca09g02239 969 Gene3D Tetratricopeptide repeat domain 1 319 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02239 - - gmx:100805682 1672.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02239 09 47586587 47594385 Cca09g02239 09 47586587 47594385 ECH