Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02081 ATGAGGAAATTGGAAGTGCGTGATATGTATCAGAGCAGCATTGGCGCACACCGCCTCGCCTACCGCTCTCACATATCCAACTTAGTCAAAGCCGGTCTCATCAACCAAGCCATCCACCTGTTCGACAAAATGACCCAAGCAGAATGCCGCGTCTTCAGCGTCGATTACAACCGCTTCATCGGCGTCCTCATCCGCCATTCCCGCCTCCACCTCGCCCACCACTACTACCGCCGCCACGTCATCCCTCGCGGCTTCTCCCTCCTCCCCCTCACCTACTCCCGCTTCATCTGCGCTCTCTGCTCCGCCCACAACCTCCCCCTCATCCACGACCTCCTCCTCGACATGGACGCCTTGGGCTTCGTCCCCGATATTTGGGCCTTCAACGCTTACCTCAACCTCTTATGTCACCAAAATCGCTTAGAAACCGCTCTCGAGCTCTTAAACTCCATGCCTTCCAAGGGAAGAGACCCCGACGTCGTTTCCTACACCATCGTCGTCCACGCCTTGTGCAAAGCGAAACGCTTCGACGAGGCCGCTAGGGTTTGGCGTCGTTTGATTGACCAAGGCTTGAGTCCCGATTGTAAAGCGTGTGTTGCTCTTGTCGTCGGGTTGTGCGGCGGGGGGCGCGTGGATTTGGCTTATGAGCTTGTTGTTGGGGTGATCAAGGGTGGGGTGAAGGTTAATAGCTTGGTTTATAATGCTTTGATCGACGGGTTTTGTAGGATGGGGAGGGTTGATAAGGCCTTGAAGATTAAGGCTTTTATGAGTGGCAATGGGTGTGTGCCGGATTTGGTTACTTATAACATACTGTTAAATTATTGTTGTGATGAGGGGATGGTGGACGAGGCGGTGAGGTTGGTGGAGACGATGGAGCGGAGCGGGGTGGAGCCGGATTTGTATAGCTATAATGAGCTGTTGAAGGGTTTTTGCAAGGCGAATATGGTGGATAGGGCTTATTTGATGATGGTGGAGAGGATGCAGGCCAGAGGGGTGTGTGATGTTGTTTCGTATAATACTGTTATCACGGCGTTTTGTAAGAGGCGCCGGACTAGGAGGGGTTACGAGCTGTTTGAGGAGATGTGTGGGAAGGGGATTAGGCCGGACATGGTGACGTTCAATATACTTATAGATGCGTTTTTGAGAGAAGGGAGTACGCAAGTGGTTAAGAAGCTGCTTGATCAGATGACAAGGATGGGTATTCTTCCTGATCGAATATTCTATACGGCAATAGTTGATCATCTATGCAAGGTTGGGAAGGTTGATATGGCTCATAGTGTTTTTCGTGACATGGTGGAGAATGGGGTAAATCCAGATGTCATATCGTACAATGCACTTGTGAATGGGTTTTGCAAGGCTTCCAGAGTTATGGATGCCATGAGTCTATATGATGAAATGCAGAGAAAAGCGTTGTACCCTGATGAGGTAACTTTCAAGTTGATAGTTGGAGGGCTTATAAGAGAGAAAAGGCTTTCACTGGCCTGTAGGGTTTGGGATCAGATGATGGAGAAAGGCTTTACACTTGATAGACATCTTTCTGAGACTCTAGTCAATGCCATTCAATCAAGTGATGGCCCATGA 1578 0.5 MRKLEVRDMYQSSIGAHRLAYRSHISNLVKAGLINQAIHLFDKMTQAECRVFSVDYNRFIGVLIRHSRLHLAHHYYRRHVIPRGFSLLPLTYSRFICALCSAHNLPLIHDLLLDMDALGFVPDIWAFNAYLNLLCHQNRLETALELLNSMPSKGRDPDVVSYTIVVHALCKAKRFDEAARVWRRLIDQGLSPDCKACVALVVGLCGGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKALKIKAFMSGNGCVPDLVTYNILLNYCCDEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAYLMMVERMQARGVCDVVSYNTVITAFCKRRRTRRGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTQVVKKLLDQMTRMGILPDRIFYTAIVDHLCKVGKVDMAHSVFRDMVENGVNPDVISYNALVNGFCKASRVMDAMSLYDEMQRKALYPDEVTFKLIVGGLIREKRLSLACRVWDQMMEKGFTLDRHLSETLVNAIQSSDGP 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02081 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 329 IPR002885 -
Cca09g02081 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Cca09g02081 525 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 7 523 - -
Cca09g02081 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Cca09g02081 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cca09g02081 525 Pfam PPR repeat 25 47 IPR002885 -
Cca09g02081 525 Pfam PPR repeat 475 505 IPR002885 -
Cca09g02081 525 Pfam PPR repeat family 402 451 IPR002885 -
Cca09g02081 525 Pfam PPR repeat family 262 311 IPR002885 -
Cca09g02081 525 Pfam PPR repeat family 122 171 IPR002885 -
Cca09g02081 525 Pfam PPR repeat family 333 380 IPR002885 -
Cca09g02081 525 Pfam PPR repeat 224 251 IPR002885 -
Cca09g02081 525 TIGRFAM PPR: pentatricopeptide repeat domain 300 332 IPR002885 -
Cca09g02081 525 TIGRFAM PPR: pentatricopeptide repeat domain 440 474 IPR002885 -
Cca09g02081 525 TIGRFAM PPR: pentatricopeptide repeat domain 126 159 IPR002885 -
Cca09g02081 525 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Cca09g02081 525 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Cca09g02081 525 TIGRFAM PPR: pentatricopeptide repeat domain 407 439 IPR002885 -
Cca09g02081 525 TIGRFAM PPR: pentatricopeptide repeat domain 160 194 IPR002885 -
Cca09g02081 525 TIGRFAM PPR: pentatricopeptide repeat domain 265 298 IPR002885 -
Cca09g02081 525 TIGRFAM PPR: pentatricopeptide repeat domain 231 263 IPR002885 -
Cca09g02081 525 TIGRFAM PPR: pentatricopeptide repeat domain 335 368 IPR002885 -
Cca09g02081 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Cca09g02081 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Cca09g02081 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Cca09g02081 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Cca09g02081 525 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 7 523 - -
Cca09g02081 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Cca09g02081 525 Gene3D Tetratricopeptide repeat domain 222 322 IPR011990 GO:0005515
Cca09g02081 525 Gene3D Tetratricopeptide repeat domain 103 221 IPR011990 GO:0005515
Cca09g02081 525 Gene3D Tetratricopeptide repeat domain 323 398 IPR011990 GO:0005515
Cca09g02081 525 Gene3D Tetratricopeptide repeat domain 407 523 IPR011990 GO:0005515
Cca09g02081 525 Gene3D Tetratricopeptide repeat domain 6 102 IPR011990 GO:0005515
Cca09g02081 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02081 259 522 Glycosyltransferase AT1G05670 29.434 2.89e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02081 - - gmx:100801230 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02081 09 45853389 45854966 Cca09g02081 09 45853389 45854966 ECH