Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02069 ATGGATCCCTCTATGTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTATACGAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTATATTACCGACAGTTGTTGCAGTTAATGAGTCGTTTCTGAATCAATCTAGGAGCACTTCCAAAGGCAATTGGGTGACCCAGCACAATGCTGGGGTTATCGCGGATCTTGATTTCTTCATCGGGGATGAGGCGCTTGCTAAGTATCGAACTAGCAGCACATACAATCTCAACTATCCGATTCAGCAGGGCCAGATTGAGAATTGGGATGCCATGGAGCGATTTTGGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCAGAGGATCACTATTTTCTCTTGACTGAGAGTCCATTGACCGCGCCTGAGAGTCGTGAGTATACTGGGGAAATCATGTTTGAGACTTTTAACGTCCCTGGACTTTACATTGCTGTGAATTCTGTGCTTGCTCTTGCAGCTGGCTACACAACCTCTAAGTGCGAGATGACAGGAGTTGTAGTGGATATTGGAGATGGGGCTGCCCATGTTGTACCCGTTGCAGATGGCTATGTAATTGGTAGTAGCATCAAATCGATTCCTATTTCTGGAAAGGATGCTACTCTTTTTGTGCAGCAGCTTATGCGGGAAAGAGGAGAGAATATACCACCAGAAGACTCTTTTGAAGTGGCACGGAAAGTGAAGGAAATGCATTGCTACACCTGCTCTGACATTGTGAAGGAGTTTAATAAGCATGACAAAGAACCAGCCAAGTATGTCAAACAGTGGAAAGGCATTAAACCAAAGACAGGAGCACCATATTCGTGTGATATTGGCTATGAACGATTTCTTGGCCCTGAGATTTTCTTTAATCCTGAGATATACAGCAGCGACTTTACCACCCCTTTGCCAGTTATAATAGACAAGTGCATTCAGTCTGCACCAATTGACACAAGAAGATCATTATACAAGAATATAGTGTTGTCTGGAGGTTCAACCATGTTCAAGGATTTTCACAGGAGGATGCAGCGTGATATAAGAAAAATAGTGGATGCTCGTGTCCTTTCATCTGAAGCGCGCTTAAATGGGGAGATAAAATCGCAGCCAGTGGAGGTAAATGTAGTCAGCCATCCCATCCAGAGATTTGCAGTTTGGTTTGGAGGATCAGTGCTTGCATCAACACCTGAATTTTTTGCGTCTTGTCATACAAAGGAAGAATATGACGAGTATGGAGCAAGCATTTGCCGTACAAATCCTGTTTTCAAGGGGATGTATTAA 1287 0.4406 MDPSMSRPAVVIDNGSGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSTSKGNWVTQHNAGVIADLDFFIGDEALAKYRTSSTYNLNYPIQQGQIENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDIGDGAAHVVPVADGYVIGSSIKSIPISGKDATLFVQQLMRERGENIPPEDSFEVARKVKEMHCYTCSDIVKEFNKHDKEPAKYVKQWKGIKPKTGAPYSCDIGYERFLGPEIFFNPEIYSSDFTTPLPVIIDKCIQSAPIDTRRSLYKNIVLSGGSTMFKDFHRRMQRDIRKIVDARVLSSEARLNGEIKSQPVEVNVVSHPIQRFAVWFGGSVLASTPEFFASCHTKEEYDEYGASICRTNPVFKGMY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02069 428 PANTHER ACTIN-RELATED PROTEIN 3-LIKE 7 421 - -
Cca09g02069 428 SMART actin_3 7 423 IPR004000 -
Cca09g02069 428 Gene3D - 158 386 - -
Cca09g02069 428 SUPERFAMILY Actin-like ATPase domain 173 423 IPR043129 -
Cca09g02069 428 PANTHER ACTIN 7 421 IPR004000 -
Cca09g02069 428 SUPERFAMILY Actin-like ATPase domain 6 177 IPR043129 -
Cca09g02069 428 Pfam Actin 8 419 IPR004000 -
Cca09g02069 428 Gene3D - 10 414 - -
Cca09g02069 428 CDD NBD_sugar-kinase_HSP70_actin 10 225 - -
Cca09g02069 428 Gene3D Actin; Chain A, domain 4 205 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02069 Cca-Chr9 45762268 45768745 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02069 9 418 Miscellaneous Gene Families AT2G42100 34.223 2.86e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02069 K18584 - gmx:100780462 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02069 09 45762268 45768745 Cca09g02069 09 45762268 45768745 ECH