Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02063 ATGGCATGCAACGTGGAACTTGCAGAACTCATCATCTCATTCATCGGTTTCATCGTCACGCTCAACCTTCTCATCTCCCTCGCCACATGGATCTTCCACACCTCTTTCCGATCCCAGAAGGACCTCGCCCGAGCCTACGGCTCCTGGGCTCTGGTCACCGGCGCCACCGACGGCATCGGAAAAGCCTTCGCCCACCAGCTCGCGCGGCGGGGCCTCAACCTCATTCTCGTCAGCAGAACCATCCAGAAGCTCCAAACGGTAGCATGCGAAATCAAAGCGGAAAACCCCGAGAGGCGCGTGAAGGTGGTAGAGATGGACTTCGGCGGCGACGACGTGCGGGAGGGTCTCCGGCGAGTGGAGGAGGCGTGCGAGGGGTTGGAGGTTGGGGTTGTGATCAACAACGTGGGAATGACGTACCCGAGAGCGATGTGGTTTCATGAAGTGGAGGAGAAGGTTTGGAGGAAGATAGTGAGAGTGAACATGGAAGGAACGACGAGTGTGACGAAGGTGGTTCTGAAGGGAATGCTAGAACGGAGAAGAGGTGCCATCGTTAACATTGGATCGGCTGCTGCGGTGGTTGTGCCTTCGCATCCTCTCTTTACAATCTATGCTGCTACCAAAGCTTACGTGGACCAGTTATCAAGATCTCTATACGTGGAGTATGGACAATATGGGATACATGTGCAATGTCAGGTACCACTGTACGTTGCAACGAATATGGCATCAGGGGTGGCATCTATTGAGAGAGCTTCTCTGTTTGTACCAACAGCTGAGGCCTATGCAAGAGCTGCAATTCGTGAAATTGGGCTAAAACCAAGGTGCACACCTTATTGGGCTCACTCAATTCAGTGGTGTTTAGCAAACTTCATCCCTGATCCACTCCTTGATGCTTGGCGCTTGTCCATTGGAATGCGCCGCAGGAATCAAAAGGAACACTGA 939 0.5325 MACNVELAELIISFIGFIVTLNLLISLATWIFHTSFRSQKDLARAYGSWALVTGATDGIGKAFAHQLARRGLNLILVSRTIQKLQTVACEIKAENPERRVKVVEMDFGGDDVREGLRRVEEACEGLEVGVVINNVGMTYPRAMWFHEVEEKVWRKIVRVNMEGTTSVTKVVLKGMLERRRGAIVNIGSAAAVVVPSHPLFTIYAATKAYVDQLSRSLYVEYGQYGIHVQCQVPLYVATNMASGVASIERASLFVPTAEAYARAAIREIGLKPRCTPYWAHSIQWCLANFIPDPLLDAWRLSIGMRRRNQKEH 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02063 312 CDD 17beta-HSD1_like_SDR_c 47 291 - -
Cca09g02063 312 Pfam short chain dehydrogenase 49 243 IPR002347 -
Cca09g02063 312 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 10 310 - -
Cca09g02063 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Cca09g02063 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 189 IPR002347 -
Cca09g02063 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Cca09g02063 312 PIRSF 11-beta-HSD1 1 312 - -
Cca09g02063 312 Gene3D - 41 274 - -
Cca09g02063 312 PANTHER RH59310P 10 310 - -
Cca09g02063 312 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Cca09g02063 312 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Cca09g02063 312 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Cca09g02063 312 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Cca09g02063 312 PRINTS Glucose/ribitol dehydrogenase family signature 224 241 IPR002347 -
Cca09g02063 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 299 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02063 Cca-Chr9 45726001 45728624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02063 11 308 Lipid Metabolism Gene Families AT1G24470 58.528 8.51e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02063 K10251 - cit:102621211 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02063 09 45726001 45728624 Cca01g00137 01 1344680 1348283 PCT