Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01388 ATGCAGCAAACGGCGTTGCATTGGGCGGCGGTTCGCGGTTCAACTGCTGCTGCTGATGTGCTCCTGGAGAATGGTGCTCGGGTTGAAGCTGCTGACGTGAATGGATACCGGGCAGTTCATGTTGCTGCACAGTATGGACAGACAGCTTTTCTAAATCACATAGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCCGACACAATAAGATTGCTCCTATTTAGAGATGCAAGTCAAGGAAGGCAAGATAAAGATGGTTGTACACCATTGCACTGGGCTGCTTTAAGAGGAAATGCAGAGGCATGCGCTGTGCTTGTACATGCAGGCACAAAGGAAGAATTGTCAGTGAAGGACAATGCTGGACACACTCCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTCCTTTCCTTTCAAATCAACAACGGGCTCATAACAACTACTGGAGAGGGAAACTTTGTTGTGGGATGGTGACAGATATTGGTTATGCTCCCATCTTATTGTGTATTATAATCTTTCTCACAATCCTCTTCGTCAACTGTGTTGTTGCAGCTCCTAACCTTAAAAAGATTACTGCCATTGTTGGACTTTGGTCGTGGACAGCACTTTCTCTGGTATTTGGTGCCCTTATTATGTTCTATAGGTGTAGTAGTAAAGATCCAGGTTATATAAAACGGCCAGGAGACTTGGGCACTCAAAGTGATACTGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAACTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGGCCTGTCCGATCTAAGCATTGCCCTACTTGTAAGCGATGTGTGGAACAGTTCGACCACCATTGTCCATGGATTTCTAACTGTGTTGGGAAGAGGAACAAAAGAGATTTCTTTATTTTTATCTGCCTGGGAACTTTGACTTCTACCCTTTCTGCTGCCATTGCAATTCAAAGAATTTGCACATCCACACCATCATTACTGGCAGGAGAAACATGGATCCATTATGTGCTAGTAAGACATCAAGGTGTAATTGTGTTTTTGGTGGTGGACGCTGTTGTCTTCATTGCGGCTACAACATTAACGATAACACAGGCTTCCATGATTGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCTCGTTATGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATATAACCACGGTTGTTGGAAGAATTGTGCTGACTTCCTTTTTCTGGGCTATACAAATGATGATAATATTACTTGGCCTCCACTACAGCAGGTTGCAACTTAG 1359 0.4371 MQQTALHWAAVRGSTAAADVLLENGARVEAADVNGYRAVHVAAQYGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNAEACAVLVHAGTKEELSVKDNAGHTPVQLAYDKGHRHVAPFLSNQQRAHNNYWRGKLCCGMVTDIGYAPILLCIIIFLTILFVNCVVAAPNLKKITAIVGLWSWTALSLVFGALIMFYRCSSKDPGYIKRPGDLGTQSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSTLSAAIAIQRICTSTPSLLAGETWIHYVLVRHQGVIVFLVVDAVVFIAATTLTITQASMIARNVTTNELANSSRYDYLRGPDGRFRNPYNHGCWKNCADFLFLGYTNDDNITWPPLQQVAT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01388 452 ProSiteProfiles Ankyrin repeat profile. 1 33 IPR002110 GO:0005515
Cca09g01388 452 Pfam DHHC palmitoyltransferase 275 402 IPR001594 GO:0016409
Cca09g01388 452 PANTHER - 3 441 - -
Cca09g01388 452 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Cca09g01388 452 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
Cca09g01388 452 Pfam Ankyrin repeats (3 copies) 40 126 IPR002110 GO:0005515
Cca09g01388 452 Gene3D - 1 87 IPR036770 -
Cca09g01388 452 PANTHER PROTEIN S-ACYLTRANSFERASE 24 3 441 - -
Cca09g01388 452 ProSiteProfiles Ankyrin repeat region circular profile. 101 125 - -
Cca09g01388 452 ProSiteProfiles Ankyrin repeat profile. 34 67 IPR002110 GO:0005515
Cca09g01388 452 ProSiteProfiles DHHC domain profile. 275 325 - -
Cca09g01388 452 ProSiteProfiles Ankyrin repeat region circular profile. 68 94 - -
Cca09g01388 452 SUPERFAMILY Ankyrin repeat 3 158 IPR036770 -
Cca09g01388 452 Gene3D - 88 168 IPR036770 -
Cca09g01388 452 SMART ANK_2a 101 132 IPR002110 GO:0005515
Cca09g01388 452 SMART ANK_2a 1 30 IPR002110 GO:0005515
Cca09g01388 452 SMART ANK_2a 34 64 IPR002110 GO:0005515
Cca09g01388 452 SMART ANK_2a 68 97 IPR002110 GO:0005515
Cca09g01388 452 SMART ANK_2a 136 165 IPR002110 GO:0005515
Cca09g01388 452 ProSiteProfiles Ankyrin repeat region circular profile. 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01388 Cca-Chr9 37113564 37122159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01388 6 148 Miscellaneous Gene Families AT1G05640 33.103 1.22e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01388 K20032 - gmx:100807263 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01388 09 37113564 37122159 Cca09g01388 09 37113564 37122159 ECH