Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01384 ATGGAAGCACGTGCAGGAGCCAATCTCCGTATTGCAACAATCTCTGCTCATCTTCAGCCTCCAAATTTTCAGGAAGGAAGTGATGTTCTTCTTAAGAGAGCTGAGTGCAGAGCTAAAGGTGGAGCACCTGGATTCAAAGTGGCTATTTTGGGGGCTGCTGGGGGAATTGGTCAATCCCTTTCTTTGTTGATGAAGATGAATCCATTGGTTTCGGTTCTTCATCTTTATGATGTTGTCAACACCCCTGGTGTCACAGCTGATGTTAGTCACATGGACACTGGTGCAGTGGTTCGTGGCTTTCTGGGGCAGCCACAACTTGAGAGTGCACTCACTGGCATGGACTTGGTAATTATACCTGCTGGGGTGCCAAGGAAGCCTGGGATGACTAGGGACGATTTATTTAAAATCAATGCAGGAATTGTGAGGACCCTGTGTGAAGGAATTGCCAAGTGCTGCCCCAATGCAATTGTCAACTTGATTAGTAATCCAGTGAATTCCACTGTTCCAATTGCTGCGGAGGTTTTCAAGAAAGCCGGTACATATGATCCAAAGCGATTACTTGGTGTTACAGCCCTTGATGTTGTGAGGGCAAATACTTTTGTGGCAGAGGTACTTGGAGTTGATCCAAGAGAGGTTGATGTTCCAGTTGTGGGAGGTCATGCTGGGGTCACAATTTTGCCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACTGAATACCTGACAAATCGCATCCAAAATGGTGGAACTGAAGTTGTTGAGGCAAAAGCTGGGGCTGGTTCTGCAACACTATCAATGGCATATGCAGCTGCCAAGTTCGCTGACGCATGCCTGCGTGGTTTAAAAGGAGAAGCTGGGGTGGTGGAGTGTGCTTTTGTTGATTCTCAGGTTACGGAACTTCCATACTTTGCAACCAAGGTACGTCTTGGACGCGCTGGAGCAGAAGAGGTTTATCAACTGGGTCCCCTGAACGAGTATGAAAGGATTGGGTTGGAAAAAGCAAAGAGAGAACTAGCAGGAAGCATCCAGAAGGGTGTAGAATTCATCAGAAAATAA 1071 0.4687 MEARAGANLRIATISAHLQPPNFQEGSDVLLKRAECRAKGGAPGFKVAILGAAGGIGQSLSLLMKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTALDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLKGEAGVVECAFVDSQVTELPYFATKVRLGRAGAEEVYQLGPLNEYERIGLEKAKRELAGSIQKGVEFIRK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01384 356 PANTHER MALATE DEHYDROGENASE 2, PEROXISOMAL 4 356 - -
Cca09g01384 356 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 46 355 IPR010097 GO:0006099|GO:0030060
Cca09g01384 356 PIRSF Lac_mal_DH 44 353 IPR001557 GO:0016616|GO:0019752
Cca09g01384 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 188 IPR036291 -
Cca09g01384 356 CDD MDH_glyoxysomal_mitochondrial 45 354 IPR010097 GO:0006099|GO:0030060
Cca09g01384 356 SUPERFAMILY LDH C-terminal domain-like 189 354 IPR015955 GO:0003824|GO:0016616
Cca09g01384 356 Pfam lactate/malate dehydrogenase, NAD binding domain 46 188 IPR001236 GO:0016491
Cca09g01384 356 Gene3D - 190 356 IPR015955 GO:0003824|GO:0016616
Cca09g01384 356 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 190 354 IPR022383 GO:0016616
Cca09g01384 356 Gene3D - 37 189 - -
Cca09g01384 356 PANTHER MALATE AND LACTATE DEHYDROGENASE 4 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01384 Cca-Chr9 37069494 37072903 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01384 K00026 - gmx:100170735 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01384 09 37069494 37072903 Cca09g01384 09 37069494 37072903 ECH