Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01383 ATGATGGATTATCAGTATATTCTGGGAGTGATTCTGGCTGGTAGTTTGGCATTTGTGTATGTTGTGTACAGTTTTGGAGCAAGGAAGAAGGTGAAGTACACAGATTCAAGTTCAATACATGTAAAAAGTAATGAATGTGCAAAGACATCAGAGAATGGAAAATGTTCATATGAAGCTGCAGGAAGTGCTGACATCATCATTGTGGGTGCTGGGGTTGCTGGTGCAGCTCTTGCTTACACGCTTGGAAAGGATGGACGGCGAGTCCATGTGATTGAAAGGGATTTGAGTGAACCTGACAGGATTGTGGGTGAATTGCTACAACCTGGTGGCTATCTGAAATTAATTGAGTTGGGTCTTCAGGATTGTGTGCATGAAATTGATGCTCAGCAAGTCTTTGGCTATGCTCTGTATAAGGATGGAAAAAATACTAAGCTGTCTTATCCCTTGGAAAATTTTGACTCTGATGTTTCTGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGCGAGAAAAGGCTTCATCTCTTCCAAGTGTAAAGTTAGAACAAGGAACTGTCACATCTCTACTTGAAGATAATGGAATCATCACTGGGGTGCATTACAAAACCAAAAGTGGACAAGAGTTCACAGCAAAGGCTCCCCTTACTATAGTATGTGATGGTTGTTTTTCCAACTTGAGGCGTTCTCTTTGCAATCCTAAGGTTGAAGTACCCTCCCATTTTGTTGGTCTGGTCTTGGAGAATTGTAATCTTCCATATGCAAATCATGGACATGTCATCTTAGGTGATCCTTCACCCATTTTGTTTTATCCCATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTTCCTGGACAAAAGCTACCTTCCCTTGGTAGTGGTGAAATGGCCCGTTACTTGAAAACTGTGGTAGCTCCCCAGGTTCCTCTAGAGCTGTATGCTTCTTTTATAGCAGCTGTTGACAAAGGAAATATAAGAACCatgccaaatagaagcatgcctgcctcaccatatcccacacctggcgcacttctaatgggagatgccttcaatatgcgtcaccctttaaccggaggaggaatgactgtggcTTTATCCGACATTGTTGTGCTAAGGGATCTTCTTAAACCTCTTCATGATCTGCATGATGCTTCTGCTCTTTGCAGATACCTTGAATCATTCTATACCCTACGCAAGCCAGTAGCATCTACTATTAACACACTAGCTGGGGCATTGTACAAAGTGTTCTGTGCATCTCCTGATCCAGCAAGAAAGGAAATGCGCCAAGCATGTTTTGATTACTTGAGCCTTGGAGGGGTTTTCTCAAATGGACCAATAGCTCTACTGTCTGGTCTAAATCCTCGTCCATTGAGTTTGGTTCTCCATTTCTTCGCAGTGGCTATATATGGTGTTGGCCGTTTGCTGATACCATTTCCTTCTCCAAAACGGATGTGGATTGGAGCTAGATTGATTTCAGGTGCATCAGGCATCATTTTCCCCATTATTAAGGCTGAAGGAGTAAGACAAATGTTCTTCCCAGCAACTGTGCCAGCATATTACAGGGCCCCTCCTGTCCATTGA 1584 0.3965 MMDYQYILGVILAGSLAFVYVVYSFGARKKVKYTDSSSIHVKSNECAKTSENGKCSYEAAGSADIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLQDCVHEIDAQQVFGYALYKDGKNTKLSYPLENFDSDVSGRSFHNGRFIQRMREKASSLPSVKLEQGTVTSLLEDNGIITGVHYKTKSGQEFTAKAPLTIVCDGCFSNLRRSLCNPKVEVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGSGEMARYLKTVVAPQVPLELYASFIAAVDKGNIRTMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLKPLHDLHDASALCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPATVPAYYRAPPVH 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01383 527 Pfam Squalene epoxidase 213 486 IPR013698 GO:0004506|GO:0016021|GO:0050660
Cca09g01383 527 SUPERFAMILY FAD/NAD(P)-binding domain 63 438 IPR036188 -
Cca09g01383 527 Gene3D - 57 443 IPR036188 -
Cca09g01383 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 64 86 - -
Cca09g01383 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 213 228 - -
Cca09g01383 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 341 356 - -
Cca09g01383 527 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 356 372 - -
Cca09g01383 527 Pfam NAD(P)-binding Rossmann-like domain 67 93 - -
Cca09g01383 527 PANTHER SQUALENE MONOOXYGENASE 2 527 IPR040125 GO:0004506|GO:0016126
Cca09g01383 527 PANTHER SQUALENE MONOOXYGENASE-RELATED 2 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01383 Cca-Chr9 37059325 37063097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01383 40 526 Miscellaneous Gene Families AT1G58440 78.484 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01383 K00511 - gmx:100800329 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01383 09 37059325 37063097 Cca09g01383 09 37059325 37063097 ECH