Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01382 ATGGAAGACTACAATTTTGTTGTTGGTCAAGAGTTCCCTGATGTGAAGGCATTCCGGAATGCAATTAAAGAAGCTGCCATTGCACAGCATTTTGAGCTTCGTACTATTAAAAGTGACCTTATTCGCTACTTTGCTAAGTGTGCCTCAGATGGCTGTCCATGGCGGATTCGTGCTGTCAAACTCCCTAATGCCCCAACATTTACTATTAGAAGTATTGATGGAACACATACTTGTGGAAGAAATGCACACAATGGGCACCAGCAGGCTTCTGTTGATTGGATTGTGATCGAGCGCATTCATAGCAAACTTATGACTGAGTTTGATGACAGGCGATTAAAAAGCTGCTCATGGTGCTCTGTACTTGCCCCATCTGCTGAGAAGCTAATGACCGAAGCCATTAACCGTGCATCTACATATCAAGTCCTTAGATCAGATGAAGTAGAGTTTGAGGTTCTTTCAGCCGATCGATCAGATATTGTAAATATCGGCAGCCATAGTTGTTTCTGCCGTGATTGGCAGCCTGCTGAGAAGCTAATGACCGAAGCCATTAACCGTGCATCTACATATCAAGTCCTTAGATCAGATGAAGTAGAGTTTGAGGTTCTTTCAGCCGATCGATCAGATATTGTAAATATCGGCAGCCATAGTTGTTCCTGCCGTGATTGGCAGCTAAACGGTATTCCATGTTCACATGCTGTTGCTGCTCTCATCTCATGTCGAAAGGATGTCTATGCATTTACCCAGAAGTGTTTTACTGCTGCAAGTTACAGGGATACCTATGCAGAGGGTATACACCCCATCCCAGGAAAACTTGAATGGAGTAAAACAGATAAGCCTACCATGGATGATAATATCCTAGTTGTACGGCCACCAAAATTACGGCGGCCACCAGGACGCCCTGAAAAACGGACGTGTGTGGATGACCTTAATCGTGAAAAACATACTGTGCATTGTAGTAGGTGTAATCAAACTGGACATTACAAGAGAACATGTAAAGCAGAGATGATTAATAGTATAGAGCAGTTTTAG 1029 0.4334 MEDYNFVVGQEFPDVKAFRNAIKEAAIAQHFELRTIKSDLIRYFAKCASDGCPWRIRAVKLPNAPTFTIRSIDGTHTCGRNAHNGHQQASVDWIVIERIHSKLMTEFDDRRLKSCSWCSVLAPSAEKLMTEAINRASTYQVLRSDEVEFEVLSADRSDIVNIGSHSCFCRDWQPAEKLMTEAINRASTYQVLRSDEVEFEVLSADRSDIVNIGSHSCSCRDWQLNGIPCSHAVAALISCRKDVYAFTQKCFTAASYRDTYAEGIHPIPGKLEWSKTDKPTMDDNILVVRPPKLRRPPGRPEKRTCVDDLNREKHTVHCSRCNQTGHYKRTCKAEMINSIEQF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01382 342 PANTHER OS12G0597300 PROTEIN 3 98 - -
Cca09g01382 342 PANTHER OS12G0597300 PROTEIN 130 175 - -
Cca09g01382 342 PANTHER OS12G0597300 PROTEIN 180 334 - -
Cca09g01382 342 Pfam MuDR family transposase 5 69 IPR004332 -
Cca09g01382 342 Pfam SWIM zinc finger 206 239 IPR007527 GO:0008270
Cca09g01382 342 ProSiteProfiles Zinc finger SWIM-type profile. 199 240 IPR007527 GO:0008270
Cca09g01382 342 PANTHER POLYPROTEIN, PUTATIVE-RELATED 3 98 - -
Cca09g01382 342 PANTHER POLYPROTEIN, PUTATIVE-RELATED 180 334 - -
Cca09g01382 342 PANTHER POLYPROTEIN, PUTATIVE-RELATED 130 175 - -
Cca09g01382 342 SMART 26again6 215 242 IPR006564 GO:0008270
Cca09g01382 342 ProSiteProfiles Zinc finger CCHC-type profile. 318 332 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01382 Cca-Chr9 37053838 37055736 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01382 - - gmx:100800865 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01382 09 37053838 37055736 Cca09g01382 09 37053838 37055736 ECH