Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01381 ATGTCTATAACCCAAAACCTCACCACTGCTATCtcttcttcttcctctgcttttctagctccctcttccttcAATTCTAGGGGGCATGTTTCATTGCCTGTGAAGAGCGTGGGCATCTGCAAATGCGTTGCGACACCCCAAGAAGCTGAGACTGCCTACAAGACAAGGGTCACTCGCAATCCAAATATAGGGAAACTTCAAGCTGGCTATCTATTTCCTGAGATTGCTAGAAGAAGGTCTGCACACTTGCTGAAGTACCCTGATGCTAAAGTAATAAGCCTTGGAATTGGTGATACTACTGAACCTATTCCTGAAGTCATAACTGATGCAATGTCAAAGAGATCACATGCACTGTCGACTATAGAAGGATATAGTGGGTATGGAGCTGAACAAGGTGAAAAGCCATTAAGAAGGGCAATTGCTTCAACATTTTACAGCGATCTTGACATAGAAGAGGATGATATATTTGTCTCAGATGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTTGGGTCTGATGTAAAAATGGCTGTGCAAGATCCATCATACCCGGCCTATGTAGACTCAAGTGTAATTATGGGCCAGACTGGCTTCTACCAGAAGGATGTTCAGAAGTTTGCAAACATTGAATACATGAGGTGTAATCCAGAAAATGGTTTCTTCCCTGATTTGTCTTCAATTTCTCGACCAGATATAATTTTTTTCTGTTCGCCGAACAATCCTACTGGAGCTGCAGCAACAAGGAAACAACTGATCGAACTAGTTCAGTTTGCTAAGGACAATGGTTCTATAGTAATCCATGATTCAGCCTATGCCATGTATATTTCTGGTGACAACCCACGCTCCATCTTTGAAATTCCTGGGGCCAAAGAGGTTGCAATTGAGACTTCATCATTCAGTAAGTATGCTGGATTCACTGGAGTCCGATTGGGTTGGACTGTGATTCCAAAGCAGTTGCTCTATTCTGATGGATTTCCTGTTGCCAAGGACTTCAACCGTATTGTATGTACTTGTTTCAATGGTGCATCAAATATTTCCCAGGCGGGTGGTCTGGCTTGCCTTTCACCAGAAGGTCTTAATGCTATGCGAGAGGTTATTGGATTCTACAAAGAAAACACTAACATAATAGTGGATACATTTGATTCTCTTGGGTTTAAAGTGTATGGAGGGAAAGATGCACCATATGTGTGGGTCCATTTTCCGGGCCGAAGCTCATGGGATGTATTCAGTGAGATTCTTGAGAAGACTCACGTGGTTACAACTCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTATCAGGGTTAGTGCCTTTGGTCACAGGGAAAACATCTTGGAGGCATGCAGAAGGTTCAAGCAGCTATACAAGTGA 1380 0.4181 MSITQNLTTAISSSSSAFLAPSSFNSRGHVSLPVKSVGICKCVATPQEAETAYKTRVTRNPNIGKLQAGYLFPEIARRRSAHLLKYPDAKVISLGIGDTTEPIPEVITDAMSKRSHALSTIEGYSGYGAEQGEKPLRRAIASTFYSDLDIEEDDIFVSDGAKCDISRLQIVFGSDVKMAVQDPSYPAYVDSSVIMGQTGFYQKDVQKFANIEYMRCNPENGFFPDLSSISRPDIIFFCSPNNPTGAAATRKQLIELVQFAKDNGSIVIHDSAYAMYISGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKQLLYSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGLNAMREVIGFYKENTNIIVDTFDSLGFKVYGGKDAPYVWVHFPGRSSWDVFSEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRENILEACRRFKQLYK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01381 459 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 58 456 IPR019942 GO:0008483
Cca09g01381 459 Pfam Aminotransferase class I and II 90 454 IPR004839 GO:0009058|GO:0030170
Cca09g01381 459 Hamap LL-diaminopimelate aminotransferase [dapL]. 58 457 IPR019942 GO:0008483
Cca09g01381 459 Gene3D - 101 358 IPR015421 GO:0003824
Cca09g01381 459 Gene3D Aspartate Aminotransferase, domain 1 71 455 IPR015422 GO:0003824
Cca09g01381 459 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 8 459 - -
Cca09g01381 459 CDD AAT_like 92 456 - -
Cca09g01381 459 SUPERFAMILY PLP-dependent transferases 70 454 IPR015424 -
Cca09g01381 459 PANTHER AMINOTRANSFERASE 8 459 IPR019942 GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01381 Cca-Chr9 37045608 37052361 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01381 K10206 - gmx:100801405 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01381 09 37045608 37052361 Cca09g01381 09 37045608 37052361 ECH