Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01244 ATGTCGGAAGAAGACGAATCAATGTCGGAGCAGAGTAATGAATTAGGACTTGATTTCATTCTGAGCTTGGATAGTGTTCCATCAAAGCTCCCTCCACACCTCGAACTCATCAAATCACGTGTTCTTTGTTCCAACGATGCTCCTCTCCATACGGATACTATTCAATATTCTGGTGCCTTTGCAGCTTTGGGAGTTGATAATAGTCAGCGCTTGGATAGTTTCTGTGAAAACTTCAAGGTTGAAGTGAAGCGCCTTACGGATAGTGACATTGAGTTTGATATGATTGGTATTGATCCAGCGATTGCTAATGCTTTTCGAAGAATCCTTATTGCAGAGGTTCCAACAATGGCTATTGAAAGAGTATATATAGCAAACAATACATCAGTTGTACAGGATGAAGTTCTTTCCCATAGATTGGGCCTCGTTCCAATTCGTGCTGATCCTAGGCTATTTGAATATCCAGACAATGCGGGAGATGAGAAGAATGAAAAAAACACCATTGTCTTTAAGCTACATGCTCGTTGTCATGTGGGTCAACCTCGTATTACTGTGAAATCAGATAAACTAAAGTGGTTACCTAATGGGAGTGAGCTTCCTTGTGAAGATGCCAAACCAAGTGCAGGTTCAAAACCAAAAACATTTACATCATTTACTTGCAGCCAAGATTCACTTCCTGAATTTTCCAGCAACCCAATCAGTCTTACATATTCGGATATTATATTAGCTAAACTTGGACCTGGTCAGgaaattgaacttgaagtacatgcagttaaaggcattggtaggacacatgcaaaatggtccccagttgccactgcttggtatcggatgcttccagagGTTGTACTCTTGGAAGATGTTGAGGGTGAGATTGCTGACGAATTAAAAAAGAAGTGTCCAGTTAATGTGTTTGATATTGAAGACATTGGAAAAGGTAGAAGAAGGGCAAAAGTAGCCAGACCGCGGGAGTGCACTTTGTGTAGGGAATGCATCAGAGGGGGCAAAGAATGGGAAGATCGTGTATCATTACGTCGTGTGAAGAATCATTTCATTTTTACCATTGAATCAACTGGAGCATTACCCCCTGAAGTGCTATTTACTGAAGCTGTGAAGATTCTGGAAGATAAATGTGAACGTGTGATTACCGAGCTTTCTTGA 1158 0.3739 MSEEDESMSEQSNELGLDFILSLDSVPSKLPPHLELIKSRVLCSNDAPLHTDTIQYSGAFAALGVDNSQRLDSFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRLGLVPIRADPRLFEYPDNAGDEKNEKNTIVFKLHARCHVGQPRITVKSDKLKWLPNGSELPCEDAKPSAGSKPKTFTSFTCSQDSLPEFSSNPISLTYSDIILAKLGPGQEIELEVHAVKGIGRTHAKWSPVATAWYRMLPEVVLLEDVEGEIADELKKKCPVNVFDIEDIGKGRRRAKVARPRECTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01244 385 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 79 384 IPR022842 GO:0003899|GO:0006351
Cca09g01244 385 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 114 269 IPR036643 -
Cca09g01244 385 PANTHER BNAA01G22480D PROTEIN 21 385 - -
Cca09g01244 385 CDD RNAP_I_II_AC40 78 383 IPR033901 GO:0001054|GO:0001056
Cca09g01244 385 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 103 143 IPR001514 GO:0003677|GO:0003899|GO:0006351
Cca09g01244 385 Pfam RNA polymerase Rpb3/RpoA insert domain 121 268 IPR011262 GO:0003899|GO:0006351|GO:0046983
Cca09g01244 385 Gene3D - 80 376 IPR036603 GO:0006351|GO:0046983
Cca09g01244 385 SUPERFAMILY RBP11-like subunits of RNA polymerase 76 384 IPR036603 GO:0006351|GO:0046983
Cca09g01244 385 PANTHER DNA-DIRECTED RNA POLYMERASE 21 385 - -
Cca09g01244 385 Gene3D - 115 265 IPR036643 -
Cca09g01244 385 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 91 377 IPR011263 GO:0003899|GO:0006351
Cca09g01244 385 SMART rpoldneu2 89 383 IPR011263 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01244 Cca-Chr9 34704107 34707715 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01244 K03027 - gmx:100786622 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01244 09 34704107 34707715 Cca09g01244 09 34704107 34707715 ECH