Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01233 ATGAAACCTCTCAAACTTCCTTCTCCGGCACTCTCACGTGCGCTCGCACGTGCCCTCAGCTccgccacctccaccaccaccacaaccacGCAATGCGGATCCGCGTTTCCGTTGAAGACGGTAACCACCGCGAACTTCGAACCCTCGCTGGCGGAGCTCCGGCGCCACGTGCGGTCGTCGGACTTCGTGGCCATCGACCTCGAGATGACCGGCGTGACCAGCGCTCCCTGGCGCGATTCCTTCAAGTTCGACCGCTCCGACGTGCGCTACCTCAAGGTCCGAGACTCCGCCACCAAGTTCGCCGTCGTTCAGTTCGGTGTTTGCCCCTTCCGTTGGGATCCCTCCTCCCGCTCCTTCGTTGCGTATCCATACAATTTCTATGTTTTTCCACGTCAGGAGCATGCAGGGTTGGGTCCATGTGATGAATTTTTGTGCCAGACCACTTCAATGGATTTCCTGGCTAAATATCAGTTTGATTTTAATGTTTGCATACATGAAGGAATATCTTATTTATCCAGAAAACAAGAAAGAGAAGCATTAAGGGACGTTTTAAAGTTCAAAGATATTAGGGACATACCATTGGTAACCATGACAGACATTTTGTTCACTGCACGAATGAAACAGAAATTTAGTGAATGGCGTGATGGGTTATTACACGAGCAAAATCAAGAACAAATTCAAGAAGTTTCAAAAGACCCAAAATTTCAAGTGATTTTCTTTGAGATGCATCCAGCTCTTAGGCTTAATGGATTCACCTCTCACCAACTTAAATTGATTCAGTTGGTCATCAGGAAACACTTCAAAGATCTTTGTTATGTCAGTGTGAACAGGGAGACTTCTGGTTCACAACAATTAGTCGTATATACAGATTCAAAGGATGAATTAAACTTACTTATGAAGAAGGTGAAAGAAGAAAATCATAAGGAAGCAGAGATGAAGATTCAAGTTGCAGTGGGATTTCGCCATGTTATTGATCTCCTTTCAATGGAGCAAAAGTTGCTAGTTGGTCACAATTGTTTTCTAGATCTTGCTCATGTCTACAGCAAATTTATAGGCCCTCTTCCAGCAACTCCTGAAGAGTTTGCTTTCTCTGTTAACAAGTGCTTTCCACACATTGTTGACACCAAAATACTCTTGAACACTAATTTTATGCTCCAAGAAAAGATGAAAAGGTCAAGAAAATCATTGGCCTCTGCTTTCACTTCATTTTGTCCACAAATTGCAGCTGGCTCCAGAAACACTGATCTAGGTTCACTCTCACACGTGAAGGTGGACATTGAAGTTGATGATTCAAGATCATCCAGCTGGAACCCTGGAGGCAAGCATGAAGCAGGATATGATGCTTTCATGACTGGATGCATCTTTGCCCAGTTATGCAGTGATTTAGGTATCGATTTTAAACTCCACGAATCTACAAAACAGTTAGCCCTCAATGAGAAACTGCAGAAGTACGTGAATCGTCTATATCTTAGTTGGATGCACGGGGACATTATTGATCTAAATACCGGTAATAAGGTTGCAGATTCTTCACCTAGCCACAGCCTCAAGAAGCGGTACCCAAAAATTTTGTTTGAGAACATTGTTATTATTTGGGGATTTCCTTCTAAGCTGAAGGCAAATGAAGTAAGAGAGTGCATATCTAAAGTATTTGGACCGAATTCTGTAGTTTCTGTCTTCCACTTGGATGCAACTGCAGCATTTGTTCAGTTTAGCAAAACTGAATTTGTTTCTGATTTTCTTCTAGTGAAGGACACCTTAGAGAGAGGTGATGGTGCAATCATGGTTTTGCATCCGCTGGCAAAACTTTTGGAAGGTGGAAATACATGTGCCGCGAATTATGATACTTATAAAGAAATATGTGGTTCACCCTTATCAGAAGGTCTGTTTGCTGATCAGGCAAAGGCAGTTGGTATAAAATGGAAGACCAAATTGACAGAATACAAGGTAGCATTGGAGGGCGAAGAACATGGAAACCCAAGTGTACAAGGTAATGTAAATACAGCTATGAAGAATGTAGAAAGGACTAGGCAAAACACAATTGATCAGTTAAGAAATGCTCCATCTCGAGGGCATGTATCATCGTTTGAGATTGAGGATTCTTCATGTGTTGCAGAAGCTAACTCGTGA 2127 0.4208 MKPLKLPSPALSRALARALSSATSTTTTTTQCGSAFPLKTVTTANFEPSLAELRRHVRSSDFVAIDLEMTGVTSAPWRDSFKFDRSDVRYLKVRDSATKFAVVQFGVCPFRWDPSSRSFVAYPYNFYVFPRQEHAGLGPCDEFLCQTTSMDFLAKYQFDFNVCIHEGISYLSRKQEREALRDVLKFKDIRDIPLVTMTDILFTARMKQKFSEWRDGLLHEQNQEQIQEVSKDPKFQVIFFEMHPALRLNGFTSHQLKLIQLVIRKHFKDLCYVSVNRETSGSQQLVVYTDSKDELNLLMKKVKEENHKEAEMKIQVAVGFRHVIDLLSMEQKLLVGHNCFLDLAHVYSKFIGPLPATPEEFAFSVNKCFPHIVDTKILLNTNFMLQEKMKRSRKSLASAFTSFCPQIAAGSRNTDLGSLSHVKVDIEVDDSRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGIDFKLHESTKQLALNEKLQKYVNRLYLSWMHGDIIDLNTGNKVADSSPSHSLKKRYPKILFENIVIIWGFPSKLKANEVRECISKVFGPNSVVSVFHLDATAAFVQFSKTEFVSDFLLVKDTLERGDGAIMVLHPLAKLLEGGNTCAANYDTYKEICGSPLSEGLFADQAKAVGIKWKTKLTEYKVALEGEEHGNPSVQGNVNTAMKNVERTRQNTIDQLRNAPSRGHVSSFEIEDSSCVAEANS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01233 708 SUPERFAMILY Ribonuclease H-like 39 467 IPR012337 -
Cca09g01233 708 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 37 641 - -
Cca09g01233 708 Pfam CAF1 family ribonuclease 41 455 IPR006941 -
Cca09g01233 708 Gene3D - 40 235 IPR036397 GO:0003676
Cca09g01233 708 Gene3D - 282 504 IPR036397 GO:0003676
Cca09g01233 708 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 37 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01233 Cca-Chr9 34561776 34566840 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01233 K01148 - gmx:100784997 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01233 09 34561776 34566840 Cca09g01233 09 34561776 34566840 ECH