Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01227 ATGTCTCTGGGGTATGCCGAGAAGCTTTCCTACATAGAAGATGTGGGCAACGTTGGAATGGTCGAATACTTCGACCCATCTCACGTTTTGCGAGAAAAAATAGATCAACTTTCTATCATGATAAAAAAGAGTAAGCATCTTGTGGTGTTTACAGGTGCAGGAATATCAACTTCTTGTGGTATTCCTGATTTTCGAGGTCCCAAGGGAATTTGGACACTTCAGCGTGAAGGTAAAGCCTTGCCCGAAGCATCACTACCATTTCATCGTGCAGCACCAAGCCTGACACACATGGCTCTGGTTGAATTAGAAAAGGCTGGCATTTTGAAGTTTGTCATTAGTCAGAATGTTGATGGTCTCCATCTTCGATCTGGAATACCAAGGGAGAAACTAGCTGAATTGCACGGGAATTCCTTCATGGAGACATGCCCTTCTTGTGGAGCAGAGTACTTCCGTGATTTTGAGGTAGAAACTATCGGTTTAAAGGAAACATCAAGGCGTTGTTCAGTTGCCAAATGTGGGACAAAACTTAAGGATACAGTCCTTGACTGGGAGGATGCATTGCCTCCAAAGGAGATGAATCCTGCTGAGAAGCACTGCAAACAGGCAGATATAGTGTTATGCTTGGGGACAAGTTTACAAATAACTCCAGCATGCAACTTGCCTCTGAAAGCACTTCGTGGTGGGGGTAAAGTTGTCATTGTAAATCTCCAGAAAACTCCAAAGGATAAAAAAGCCTGTTTAGTCATACATGGGTTTGTAGATAAGGTAGTTGCAGGCGTGATGGACCAGCTTAATATGCAGATTTCTCCATTTGTCAGGATTGATCTTTTCCAGATTATTCTAATGCAAGCTTTGAGCATCGATAAAAGATATGTGAACTGGACTCTCCAGGTTGCTAGTGCTCATGGACAAAGAGCGGCATTGCCTTTCATAAAGTCTGTTGAGATCTCCTTCTTGGACAGGGAAGATTACAAAGCAGCTATTCTGGATAAGCAACCGTTTCGGCTTAAAAGGAGAACAGCATATAACAAAGCATTTGAAATGGTTCTGAAACTCAAATTCAGTGATGGCTGTGGTTGCTCATCCCTTGAAATTGATGTCCCTGTTGATTTTAAGGTTTCAACTGACTGCTTTGACTTTGATAAGGATTACATATTCCAAAAGCTGAGAGACAAGGCAGTTCTTGAATCAAGATGTGGTCAGAATGCTGTTATTGAGAGAAAGACCATCTTGACACCTAGAAGTGATGTCACTACCTATGCCATTGTGACCAATGTTGTTCAGTACAGCAAAACATGCGAAGCAGCCCTTGATTCTCTAAGTAATGGTGATCTTAAAAAAAGAAAAGCTAGTGTGGCAGGTACAGGATCATCTAGGAAGCGTTCAAAAGGGTCCTCCATGTGTAAATCTAGATCAGAGAATATTAGGGACTATTTGTAG 1440 0.4201 MSLGYAEKLSYIEDVGNVGMVEYFDPSHVLREKIDQLSIMIKKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKALPEASLPFHRAAPSLTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMETCPSCGAEYFRDFEVETIGLKETSRRCSVAKCGTKLKDTVLDWEDALPPKEMNPAEKHCKQADIVLCLGTSLQITPACNLPLKALRGGGKVVIVNLQKTPKDKKACLVIHGFVDKVVAGVMDQLNMQISPFVRIDLFQIILMQALSIDKRYVNWTLQVASAHGQRAALPFIKSVEISFLDREDYKAAILDKQPFRLKRRTAYNKAFEMVLKLKFSDGCGCSSLEIDVPVDFKVSTDCFDFDKDYIFQKLRDKAVLESRCGQNAVIERKTILTPRSDVTTYAIVTNVVQYSKTCEAALDSLSNGDLKKRKASVAGTGSSRKRSKGSSMCKSRSENIRDYL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01227 479 Pfam Sir2 family 86 216 IPR003000 GO:0070403
Cca09g01227 479 Pfam Sir2 family 52 75 IPR003000 GO:0070403
Cca09g01227 479 Gene3D - 37 262 - -
Cca09g01227 479 MobiDBLite consensus disorder prediction 450 479 - -
Cca09g01227 479 MobiDBLite consensus disorder prediction 455 472 - -
Cca09g01227 479 ProSiteProfiles Sirtuin catalytic domain profile. 35 269 IPR026590 -
Cca09g01227 479 PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-(6/7) FAMILY MEMBER 1 466 - -
Cca09g01227 479 Gene3D - 135 184 - -
Cca09g01227 479 SUPERFAMILY DHS-like NAD/FAD-binding domain 5 292 IPR029035 -
Cca09g01227 479 PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SRT1 1 466 - -
Cca09g01227 479 CDD SIRT7 45 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01227 Cca-Chr9 34452371 34463954 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01227 K11416 - gmx:100803586 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01227 09 34452371 34463954 Cca09g01227 09 34452371 34463954 ECH