Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01226 ATGTCAGTCTCAGCTAGTCCAACATTGCTGTTAGGGGATCGACCGTGTGAAAATGGATTTGAATGTGTTAACATTCTCCCTGCCACCAATGATGCACATGGAGGAGTCATTGTGGACTTAAAAGAGGCTATGGACTCTGAAGTTTTTGCTACTTTGCTTAGATCTTCACTTGTACATTGGAAGCAACAGGGGAAAGATGGTGTTTGGATCAAATTACCTATCGAGCTTGTTAATCTTGTTGAAATTGTAGTTAAGGAGGGATTTTGGTACCACCATGCTGAGCCAAGCTATTTGATGCTAGTTTACTGGATTCCCAAAACAGGTTGCACAATTCCTCCAAATGCTTCACATCGTGTAGGAGTTGGAGCTATTGTCATAAATGATAAGAAAGAGGTGCTTGTTGTTCAGGAAAAAAGAGGTGGATTCCATGGGATTGGTGTTTGGAAGATACCTACTGGGGTAGTTGATGCAGGTGAGGAGATTTTTGAAGCAACTATTAGAGAAGTAAAAGAAGAGACAGGAATTGATACAGAATTTGTGGAAGTATTAGCATTCAGGCACACACACAATTCATTCTTTGGAAAATCAGATTTATCTTTTGTTTGCATGTTGCGTCCTCTTTCTTTCGACATCAAAAAGCAAGAATTGGAAATTGAGGCAGCTCAGTGGATGCCATTCGAGGAATTTGCTAGTCAACCTTTTAATAAGATGCACGAGCCCTTCAAGTACATGATTGAATTGTGTTTGGCAAAGGTGGCAAATGTCTATAATGGATTCTCTTGGAGGAAAACAGTCAATCCAGCATTGCTTAGTTTGTTGAGCCAAGACCAATTTGCTGGGGGCAATTTGGAGGATCCAAATGCTCACATCTCTAAATTTTTGGAGATAAGTGAAACAGTGAAGTTCCAAGATGTCCCTGAAGAAGCTGTCAAGATGAGACTTTTCCCTCTTACTCTAAAAGATGATGCGAAGGAGTGGTATCAAACCCAACCCAAGAAAGTCTTTACCTCTTGGGAGATAATGATTGAACGGTTCATAGACCATTTCTTTCCACATTCTCTTTATTTCCATGGGAGAAATCAAATCATCAATTTTATGCAAAAGGAGGGAGAGGACCTATTTGATACATGGGAAAGGTATAAATGTCTTCTTAAGAAATGTCCTCATGGGTTTGATGAATTTGAGCAAGTACATTATTTTCTTATTGGATTAAGGAGCCAAACTAGGATGATCCTTGATGCCTCAGCTGGGGGCAACATGAAATCGAAGACTGCTAAAGAAGCTGTGAATATCATAGAGAACATGGCTTCTAATGAATATAGCTTTAAATATGACAAAGGCCCAAGTTCTAGAAGGGGGACCCTAGAGCTTGATACAAAAAGTGCTTCACAAGAACAACATAAACTCGTTACAAATCAATCGATTCCTCTCACTATACAATTAAGGCCCATGCAAAAAATAGGTCAATAG 1470 0.3952 MSVSASPTLLLGDRPCENGFECVNILPATNDAHGGVIVDLKEAMDSEVFATLLRSSLVHWKQQGKDGVWIKLPIELVNLVEIVVKEGFWYHHAEPSYLMLVYWIPKTGCTIPPNASHRVGVGAIVINDKKEVLVVQEKRGGFHGIGVWKIPTGVVDAGEEIFEATIREVKEETGIDTEFVEVLAFRHTHNSFFGKSDLSFVCMLRPLSFDIKKQELEIEAAQWMPFEEFASQPFNKMHEPFKYMIELCLAKVANVYNGFSWRKTVNPALLSLLSQDQFAGGNLEDPNAHISKFLEISETVKFQDVPEEAVKMRLFPLTLKDDAKEWYQTQPKKVFTSWEIMIERFIDHFFPHSLYFHGRNQIINFMQKEGEDLFDTWERYKCLLKKCPHGFDEFEQVHYFLIGLRSQTRMILDASAGGNMKSKTAKEAVNIIENMASNEYSFKYDKGPSSRRGTLELDTKSASQEQHKLVTNQSIPLTIQLRPMQKIGQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01226 489 SUPERFAMILY Nudix 83 245 IPR015797 -
Cca09g01226 489 CDD Nudix_Hydrolase_12 117 248 - -
Cca09g01226 489 Gene3D - 23 108 - -
Cca09g01226 489 ProSiteProfiles Nudix hydrolase domain profile. 116 249 IPR000086 -
Cca09g01226 489 Pfam Retrotransposon gag protein 314 405 IPR005162 -
Cca09g01226 489 PANTHER NUDIX HYDROLASE 2 17 260 - -
Cca09g01226 489 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 76 94 IPR003293 -
Cca09g01226 489 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 174 197 IPR003293 -
Cca09g01226 489 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 114 132 IPR003293 -
Cca09g01226 489 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 202 226 IPR003293 -
Cca09g01226 489 Pfam Nudix hydrolase domain 26 104 IPR040618 -
Cca09g01226 489 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 118 257 - -
Cca09g01226 489 Pfam NUDIX domain 117 240 IPR000086 -
Cca09g01226 489 PANTHER NUDIX HYDROLASE RELATED 17 260 IPR003293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01226 Cca-Chr9 34393332 34406108 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01226 - - gmx:100783941 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01226 09 34393332 34406108 Cca09g01226 09 34393332 34406108 ECH