Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01225 ATGCAGGCTCCCACGGCGGCTCTCGCGGCGGCGCTCTTCCTCCTCTGCCTCTTTGTCTCGGAGGCGCACAACATCACGCACATCCTGGCAAAGCACCCGGAGTTCTCCACCTTCAACAGGTACCTGACGCTGACGCACCTGGCGCCGGAGGTGAACAGCAGGACCACAATCACGGTGTGCGCCGTGGACAACGCCGCCATGGAGGATCTCCTATCGAAGCACCCCTCGATCTACACCGTGAAGAACATCCTCTCCCTCCACGTCCTCCTCGACTACTTCGGCGCCAAGAAGCTGCACCAGATCACGAACGGCACCGCGCTGGCCGCCACCATGTACCAGGCCACCGGCTCCGCCCCGGGGTCCGCCGGCTTCGTCAACATCACGGACCTCCACGGCGGGAAGGTGGGGTTCGGAGCGGAGAACAACGACGGCACGCTCTCCGCGACGTTCGTGAAATCCGTGGAGGAAATCCCGTACAATATATCGGTAATCGAGATCAGCGGCATCCTCCCCTCGGCCGCAGCGGAAGCCCCTGCGCCCGCGCCCAGCAGACAAAACCTCACAGGCATTATGTCGAAACACGGATGCAAAGTCTTCGCTGACACGCTTTCCGCTTCCAAAGACGCGCTTGGCACCTTCACCGACACCCTCGACGGAGGCCTAACCGTTTTCTGCCCCCTCGACGACGCTTTCAAGTCGTTTCTCCCAAAATTCAAAAACCTAACCGCCTCCGCCAAAGTCCAGCTTCTCGAGTTTCACGGCGTTCCCGTCTACCAATCCCTCGCCACTCTCAAATCCAACAACGGCCTTCAGAACACTCTCGCCACCGACGGCGCTAACAACTTCGACTTCACCGTTCAAAACGACGGCGAACAGGTCACGCTCAAAACCAGGCTCTCCACTGCCAAAATCACCGACACGCTCTTCGACGAACAGCCTCTCGCCGTTTTCGCCATTAACAAGGTGCTTCAGCCTAAGGAGTTGTTTAAGGCTGAGTcccccgcgccgtcccccgcgcctgagcctgccgccgccgacgctccctcgccgccCAAGAAGAAGGGCAAGAAGAAGACTCCGGCTGCTGATGCACCGGCGGATGACTCCGACGCTCCGGCCGACTCGCCCGGGGATTCCGCCGATGACACCGCCGACGATAGCAACAGCGCCGTCCGCAGGTATGTTAGTGTTGTGttgcctttgcctttgcctttggctttggcgttatctttgTGTTTTTAA 1242 0.5499 MQAPTAALAAALFLLCLFVSEAHNITHILAKHPEFSTFNRYLTLTHLAPEVNSRTTITVCAVDNAAMEDLLSKHPSIYTVKNILSLHVLLDYFGAKKLHQITNGTALAATMYQATGSAPGSAGFVNITDLHGGKVGFGAENNDGTLSATFVKSVEEIPYNISVIEISGILPSAAAEAPAPAPSRQNLTGIMSKHGCKVFADTLSASKDALGTFTDTLDGGLTVFCPLDDAFKSFLPKFKNLTASAKVQLLEFHGVPVYQSLATLKSNNGLQNTLATDGANNFDFTVQNDGEQVTLKTRLSTAKITDTLFDEQPLAVFAINKVLQPKELFKAESPAPSPAPEPAAADAPSPPKKKGKKKTPAADAPADDSDAPADSPGDSADDTADDSNSAVRRYVSVVLPLPLPLALALSLCF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01225 413 ProSiteProfiles FAS1/BIgH3 domain profile. 183 323 IPR000782 -
Cca09g01225 413 MobiDBLite consensus disorder prediction 350 364 - -
Cca09g01225 413 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 7 401 - -
Cca09g01225 413 SUPERFAMILY FAS1 domain 179 326 IPR036378 -
Cca09g01225 413 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7 401 IPR033254 -
Cca09g01225 413 Gene3D FAS1 domain 20 168 IPR036378 -
Cca09g01225 413 ProSiteProfiles FAS1/BIgH3 domain profile. 22 170 IPR000782 -
Cca09g01225 413 MobiDBLite consensus disorder prediction 331 388 - -
Cca09g01225 413 Pfam Fasciclin domain 33 103 IPR000782 -
Cca09g01225 413 Pfam Fasciclin domain 199 325 IPR000782 -
Cca09g01225 413 SUPERFAMILY FAS1 domain 28 170 IPR036378 -
Cca09g01225 413 Gene3D FAS1 domain 170 326 IPR036378 -
Cca09g01225 413 SMART fasc_3 222 326 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01225 Cca-Chr9 34383706 34385443 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01225 - - gmx:100810878 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01225 09 34383706 34385443 Cca09g01225 09 34383706 34385443 ECH