Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01217 ATGGGTGAGGAAGAACCCGTGAGTGAAGTTTCTAAGACTGATTCAAATGGAAAGAGCTTGCAGGAGAAAACTTTGGATGAAATTACTGAGAAAAAGAACTTGGAAACTGATGGAGGAAAAGTCTTGGAGAACAATGGCATTAAAGAGTTGAAAGAAATTGAAGACGATAAGAAAGTTGATGGTGTGGAAAAGATAGAAGAGGACAGGAAAGTTGTCGTGGGGGAAGTAAAAGAGGATAAGAAAGATGGGGTGAAAGAAGCAAAAGGGGATAAGAAAGATGGAGTAACAGAAGCAAAAAAGGATAAGAAAGAAGATGGAGTAGCAGAAGCAAAAGAGGATAAGAAAGAAGATGGAGTGGAAGAAGTAAACGAGGATAAGAAAGATGGGATGGAGGAAATAAAAGAGGATATGGAGGTTGATGGTATGAAAGAAGTCAAGGAGGATAAGGAAGTTGCTGTGAAGAAGGTAGTAGAAGACAAGAAAGGTGATGAGGTGAAAGAAATAGAAGAGGATAAGAAAGATGATCATATATCTGAGAATGATAAAATGGATGAAGAAACTGAGGTAGAAGAAACAATGGAAGGTAAACAAGAAAATGAAAAAGTGGAAGCTGAAAAACCAGAAGTAGATGCTATGGAAGTAGAGGCTGGCATtaaggagaaggaggaggagagtgatgaaaaggagaaaatagaggagaatgatgaagatgaggataaggataaTATTGATAAGTCAAAAGAAGAGAAGGAAGAAGCTAGCAAGAGTAAGAAAGGATCAAAAAAACGTGGGAGAGGGAAGATTAATGGGGAGAAAGTGAAAGAGAAAAAAAAGGAACTAAAGAAAACAGAGCCAAGGACTCCTACTGTTGATCGCCCTGTGCGGGAAAGGAAATCAGTTGAGAGGTTGGTAGCATCAATTGAGAAAGATGCAAACAAAGAATTTCACATTGAAAAGGGTCGTGGTACACCTTTAAAAGATATACCAAATGTGGCATTTAAGTTATCTAGAAGGAAGACTGATGATACCTTCAAATTGTTCCATACAATCCTCTTTGGACGGAGAGGGAAGGCAGTTCAGATCAAGAGTAACATATTAAGGTTTTCTGGTTTTGTATGGCGTGACAATGAGGAAAAACAAATGATTAAAGTAAAAGAAAAACTTGACAAGTGTAATAAAGAGAAGTTACTGGAATTCTGTGATGTGCTTGACGTAACAATTGCCAAAACTATGAGGAAGGAAGATATTATTGCTAAGCTGATAGAATTTTTAGTTGCCCCTCATGCGACCACAACTGTTTTGCTTGCAGAAAAAGAGAAGCCCAGCAAGGGGAAAAAACGCAAGCGTGTTGTGAAAAGGGGTTCATCAAGATCTGGTACAACTTCAAGACGTTCTGCGAAGAGTCGGAAGAAAAATGAAGATTCTTTGGTTGTGAAGAGAAAGAGTACATCTGACACagaagatgatgagtcagaagaagagaaagaagataaagatgaagaaagtgaagaggaaaatgaaaatgaaaatggtgttgctgaaaaatctgaggatgaaacaccagagaaatttgaaagtgaagataaaagtgattctgggagtgaatctgaagatacaaaggaaaagaaaaAACCTTCTAAAACATCATCCACAAAGAAAGAATCTGCTAAGAAAAGTAAAATTGTGAAAAATACAGTTACAACTAAGTCACGCACACCACCAAAAAGAACACTTAAGAAATCATCGTTCAACCTCTCAAAGTCTGATGATGATAGTGATGAAAGTCCCAATCCAAAGGTCTTTTCAAGGAAGAAGAAAAGTGAGAAAGTAGGAAAGCAGAAGACGTCAACACCAACTAAGTCTGCCTCCAAAGAGAAAACTGAAAAGGTTACAAAAGGAAAAGGCAAGAAGAAAGAGAAGCCAAGCCCCGCTGATAATCAGTTGCGTGATGCAATATGTGAAATTCTTAAAGAAGTTGACTTCAATACGGCCACATTTACTGACATTCTGAAGCAACTTGCTAAACAATTTGATATGGATCTCACCCCAAGAAAGGCATCTATAAAGATCATGATTCAGGAGGAGCTGACAAAACTAGCGGACGAAGCAGATGATGATGAAGGAGAAGAGGATGCTGATGCCCCATCTACAGGCCAGGAGGTTGAAGTCTGA 2172 0.3444 MGEEEPVSEVSKTDSNGKSLQEKTLDEITEKKNLETDGGKVLENNGIKELKEIEDDKKVDGVEKIEEDRKVVVGEVKEDKKDGVKEAKGDKKDGVTEAKKDKKEDGVAEAKEDKKEDGVEEVNEDKKDGMEEIKEDMEVDGMKEVKEDKEVAVKKVVEDKKGDEVKEIEEDKKDDHISENDKMDEETEVEETMEGKQENEKVEAEKPEVDAMEVEAGIKEKEEESDEKEKIEENDEDEDKDNIDKSKEEKEEASKSKKGSKKRGRGKINGEKVKEKKKELKKTEPRTPTVDRPVRERKSVERLVASIEKDANKEFHIEKGRGTPLKDIPNVAFKLSRRKTDDTFKLFHTILFGRRGKAVQIKSNILRFSGFVWRDNEEKQMIKVKEKLDKCNKEKLLEFCDVLDVTIAKTMRKEDIIAKLIEFLVAPHATTTVLLAEKEKPSKGKKRKRVVKRGSSRSGTTSRRSAKSRKKNEDSLVVKRKSTSDTEDDESEEEKEDKDEESEEENENENGVAEKSEDETPEKFESEDKSDSGSESEDTKEKKKPSKTSSTKKESAKKSKIVKNTVTTKSRTPPKRTLKKSSFNLSKSDDDSDESPNPKVFSRKKKSEKVGKQKTSTPTKSASKEKTEKVTKGKGKKKEKPSPADNQLRDAICEILKEVDFNTATFTDILKQLAKQFDMDLTPRKASIKIMIQEELTKLADEADDDEGEEDADAPSTGQEVEV 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01217 723 MobiDBLite consensus disorder prediction 437 647 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 240 258 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 619 647 - -
Cca09g01217 723 Coils Coil 166 186 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 73 183 - -
Cca09g01217 723 Coils Coil 488 508 - -
Cca09g01217 723 Coils Coil 214 263 - -
Cca09g01217 723 Coils Coil 374 394 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 266 292 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 582 604 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 699 717 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 73 292 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 487 512 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 1 31 - -
Cca09g01217 723 Pfam DEK C terminal domain 643 696 IPR014876 -
Cca09g01217 723 Gene3D - 635 698 - -
Cca09g01217 723 PANTHER DEK PROTEIN 182 712 IPR044198 GO:0003677|GO:0006325
Cca09g01217 723 MobiDBLite consensus disorder prediction 466 486 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 194 226 - -
Cca09g01217 723 SUPERFAMILY DEK C-terminal domain 637 696 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 699 723 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 513 560 - -
Cca09g01217 723 MobiDBLite consensus disorder prediction 561 581 - -
Cca09g01217 723 PANTHER PROTEIN DEK 182 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01217 Cca-Chr9 34255710 34266451 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01217 K17046 - gmx:100812631 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01217 09 34255710 34266451 Cca09g01217 09 34255710 34266451 ECH