Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01208 ATGAATGTGGGTGACCTCAACAAAGTTTGGGAAATCAGAGCACTGAAGAGGAAACCCGCGGCAGATGAAGCCACCAAAATGTTGGAGAAGATCGCCAAACAGGTCCAACCCATCATGCGCAAACACAAATGGAGGGTCAAGCTTCTCTCtgaattttgCCCGGGCAACCCGCGTCTTCTGGGGTTGAACGTTGGAGCTGGTATACATGTGAAGTTGCGGCTACGGAGACCAAACAGGGATTATGATTTTTACCCGTTTGATCAAGTGCTAGATACGATGCTTCACGAGCTTTGCCATAATGCCCATGGTCCTCATAATGCCAACTTCTACAAGCTCTGGGATGAGCTTAGAAAGGAATGTGAAGAGTTGATGGCTAAGGGAATAACTGGCGCAGGAGAAGGGTTTGATCTTCCAGGAAGGCGTTTAGGTGGCTATTCTCGGCAACCTCCACTTACCTCCCTCCGCAAAACAGCGCTGGAAGCTGCTGAAAAGAGAGCACAACTGGGATCTCTTCTTCCATCTGGACCAAAACGCCTAGGTGGTGATAGTGTTATAATGGAGGCACTTACTCCTGTACAAGCTGCTGCAATGGCTGCAGAAAGGAGATTACAGGATGATCTATGGTGTGGTTCTCAATCTTGTGAAAATGTGGATCACAGGGATGTTGATGATGAAGTTGATGAGAACATTGTGCATAAGGGGAAAGATGTGGGAAACTCAAGACTAGCAGATAATTCCACTCTACCTTCGAATCTGTCATCTCGAAAAAGAAGTCAGGCTATGGATTCAAGTTTACCTGTTAACTCATCATCTAGTGCTGCTGAATTTGTAGATTTGACTATGGATTCAGCGAAAATTAGATCTGTCATGGAGCATCAAACTGGATCTAAACGAAGATGCTGTGAATCTGAAAGCATTCCACATTCTCAATCCAATTCTCCCGCAGCATCTACTTCAGCAAATTTGTCAAGTGTGTCTGGGCCACTATCTGGTGATAATAGAACATTTCGTTCTGAAGAATCTGGAATGTGGGAGTGTACGATGTGCACTCTTTTGAATAAAAGTTTGGCTCCTATATGTGAATTGTGTGGCACGCAACAGCCAAAAGATGTTAGTACCAAATACAACACCTGGTCTTGCAAATTCTGTACGTTGGAAAATAATGTGAAGGTGGAGAATTGTTCAGCCTGTGATCAGTGGAGATACTCTCATGGCCCTCCAGTATCAACCAGGACACCTAGCCTTGGTACTTAG 1254 0.4482 MNVGDLNKVWEIRALKRKPAADEATKMLEKIAKQVQPIMRKHKWRVKLLSEFCPGNPRLLGLNVGAGIHVKLRLRRPNRDYDFYPFDQVLDTMLHELCHNAHGPHNANFYKLWDELRKECEELMAKGITGAGEGFDLPGRRLGGYSRQPPLTSLRKTALEAAEKRAQLGSLLPSGPKRLGGDSVIMEALTPVQAAAMAAERRLQDDLWCGSQSCENVDHRDVDDEVDENIVHKGKDVGNSRLADNSTLPSNLSSRKRSQAMDSSLPVNSSSSAAEFVDLTMDSAKIRSVMEHQTGSKRRCCESESIPHSQSNSPAASTSANLSSVSGPLSGDNRTFRSEESGMWECTMCTLLNKSLAPICELCGTQQPKDVSTKYNTWSCKFCTLENNVKVENCSACDQWRYSHGPPVSTRTPSLGT 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01208 417 ProSitePatterns Zinc finger RanBP2-type signature. 344 363 IPR001876 -
Cca09g01208 417 Gene3D - 337 377 - -
Cca09g01208 417 ProSiteProfiles Zinc finger RanBP2 type profile. 340 369 IPR001876 -
Cca09g01208 417 PANTHER ZINC ION BINDING PROTEIN 1 417 - -
Cca09g01208 417 Pfam WLM domain 8 204 IPR013536 -
Cca09g01208 417 ProSitePatterns Zinc finger RanBP2-type signature. 378 397 IPR001876 -
Cca09g01208 417 MobiDBLite consensus disorder prediction 232 269 - -
Cca09g01208 417 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 417 - -
Cca09g01208 417 MobiDBLite consensus disorder prediction 240 269 - -
Cca09g01208 417 MobiDBLite consensus disorder prediction 291 334 - -
Cca09g01208 417 SUPERFAMILY Ran binding protein zinc finger-like 339 367 IPR036443 -
Cca09g01208 417 ProSiteProfiles Zinc finger RanBP2 type profile. 374 403 IPR001876 -
Cca09g01208 417 ProSiteProfiles WLM domain profile. 1 204 IPR013536 -
Cca09g01208 417 SMART zf_4 376 400 IPR001876 -
Cca09g01208 417 SMART zf_4 342 366 IPR001876 -
Cca09g01208 417 MobiDBLite consensus disorder prediction 305 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01208 Cca-Chr9 34025720 34028817 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01208 K22685 - gmx:100795976 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01208 09 34025720 34028817 Cca09g01208 09 34025720 34028817 ECH