Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01182 ATGGCATTTCAAATTTTTGTTCTGAGTCAACCAGTCTTTAAGTTTGACTCAAGGGTACTCTGCACTCAGCATGAAAATTGGCCAAAGAGAATGTTTTTGTCCAAAAACAGTGGGATACAAATGCCCTTGATACCAAAGTGTGTGAAACCATGCAATTTTGCCAATTTGGTTTCTGATCATAGGGGTGATCCTAAGTTATTTACCAATGGTGGCTTGAAATGTTTGGTTGGAAGTAGTAGTACTGACAGTTTCAGTGGAAATAATGATGCTTCCATAGGGAATTTGAACTTTATTTTGAAGTTACTGAAGAAGAGGATGGGGACCATTTTGGCTGCAACTGTTTTTGGGGTGTTGTTGTTTGGATGTCCTCAAGCCTTGGCTGTAGAAGGTGTGGTGGCTATTGTGGAGCATAGCAAAGTGTTTGTTAGGAATGCATGGCCCAAAGTGTTGCCAGTTCTTAGGATATTTAAGGAGCAAGGGTTGGTACTGGCTGTACTTTTGGCTCTTTCTGCATTCTTCTCTATGGCAGAGACTTCAATTACCACCCTTTGGCCTTGGAAGGTTCGTGAGTTAGCTGAAAAGGAGTCTGAAAATTTCGTCTTCAAACTGCTCCAAAAAGATGTAACCCGATTCCTTACAACCATACTTATTGGCACAACAGTGGTTAATATTGGAGCAACAGCTCTGGTTACTAACACTGCAACTGCAGCATTTGGTGAAGCTGGTGTTACTGCAGCAACAGGATTGATGACTGTTGCTATTTTGCTTCTCACTGAGATCACTCCAAAAAGTTTTGCAGTTCACAATGCCACAGATGTGGCTCGGTTTGTGGTCAGGCCAGTGGGGTATCTTTCCGTAGTCTTGTATCCTGTAGGAAGAGTTGTTACATATTTCTCAAAGGCGATATTGAAATTGCTTGGCATAAAGGGAACAAGAGAACCATATGTTACTGAGGAAGAGCTAAAGTTGATGGTAAGAGGAGCAGAATTAAGTGGGGCAATAGAGGAGGAAGAACAGGATATGATTGAAAATGTGTTGGAGATAAAAGTAACACGAGTCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTGCAAGTCTGGTAGATTTTCGAAACTTGTGGAGGGAACATCAGTACTCAAGGATACCTATTTTTGAGAAGCGTGTTGATAATTTAATTGGCATTGCATATTCACTGGATCTGCTGGATTTTTGTCAGAAGGGTGGGGTACTAGATATTACTCCTGTTCAAGAGTTAGCTCATGATCCTGTTTATTTTGTGCCAGATTCAATGTCTATTTGGGATCTTCTAAGAGACTTCCGATTCAAGCAGGTTCACATGGCTGTTGTTTGTAATGAGTATGGTGGAACTGTTGGAATTGTAACTCTGGAAGATATTGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAACGACTCAAAGGAAGAGATTCAGAAGAAAACTGGCCACATAGTAAAGCAAGCAGATGGTGTATTTGATGTGGATGCAAAGACATCTATTGATCACCTATCCGAATATTTGAACATCAAGATGCCTCAGGGCCACCAATATGAGACAGTATCTGGCTTTGCATGTGAAAATTTTGGATACATACCTATGGCAGGTGAGAGCATTGAAGTGGTTCTTGAAAGGAAAAATCAAAATGATAATGACGTGTCCAATGCTAACCACAAGAATCAAAAAGAGACTTTCAAACTTAAGATACTATCAGGAAATGCCAAAAAGGTAACCGCTGTTCAATTTACACGAACAAATGGTAGTCAAAAACTGTTGGAGACTAAAGTAACCCCGCAAGGTCCAACAATCAGTGAAAACAAAATGTAG 1860 0.4027 MAFQIFVLSQPVFKFDSRVLCTQHENWPKRMFLSKNSGIQMPLIPKCVKPCNFANLVSDHRGDPKLFTNGGLKCLVGSSSTDSFSGNNDASIGNLNFILKLLKKRMGTILAATVFGVLLFGCPQALAVEGVVAIVEHSKVFVRNAWPKVLPVLRIFKEQGLVLAVLLALSAFFSMAETSITTLWPWKVRELAEKESENFVFKLLQKDVTRFLTTILIGTTVVNIGATALVTNTATAAFGEAGVTAATGLMTVAILLLTEITPKSFAVHNATDVARFVVRPVGYLSVVLYPVGRVVTYFSKAILKLLGIKGTREPYVTEEELKLMVRGAELSGAIEEEEQDMIENVLEIKVTRVREVMTPLVDVVAIDASASLVDFRNLWREHQYSRIPIFEKRVDNLIGIAYSLDLLDFCQKGGVLDITPVQELAHDPVYFVPDSMSIWDLLRDFRFKQVHMAVVCNEYGGTVGIVTLEDIVEEIVGEIFDENDSKEEIQKKTGHIVKQADGVFDVDAKTSIDHLSEYLNIKMPQGHQYETVSGFACENFGYIPMAGESIEVVLERKNQNDNDVSNANHKNQKETFKLKILSGNAKKVTAVQFTRTNGSQKLLETKVTPQGPTISENKM 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01182 619 SUPERFAMILY FAD-binding/transporter-associated domain-like 495 596 IPR036318 GO:0050660
Cca09g01182 619 Pfam Cyclin M transmembrane N-terminal domain 162 338 IPR002550 -
Cca09g01182 619 PANTHER BNAC03G73630D PROTEIN 71 606 - -
Cca09g01182 619 SMART cbs_1 428 476 IPR000644 -
Cca09g01182 619 SMART cbs_1 362 411 IPR000644 -
Cca09g01182 619 PANTHER HEMOLYSIN-RELATED 71 606 - -
Cca09g01182 619 ProSiteProfiles CNNM transmembrane domain profile. 152 338 IPR002550 -
Cca09g01182 619 Gene3D - 492 594 IPR016169 -
Cca09g01182 619 ProSiteProfiles CBS domain profile. 357 418 IPR000644 -
Cca09g01182 619 CDD CBS_pair_CorC_HlyC_assoc 352 473 IPR044751 -
Cca09g01182 619 Gene3D - 332 487 IPR046342 -
Cca09g01182 619 ProSiteProfiles CBS domain profile. 424 482 IPR000644 -
Cca09g01182 619 Pfam CBS domain 422 476 IPR000644 -
Cca09g01182 619 Pfam CBS domain 353 409 IPR000644 -
Cca09g01182 619 Pfam Transporter associated domain 498 596 IPR005170 -
Cca09g01182 619 SUPERFAMILY CBS-domain pair 340 479 IPR046342 -
Cca09g01182 619 SMART CorC_HlyC_2 497 597 IPR005170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01182 Cca-Chr9 33373450 33379603 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01182 - - gmx:100778907 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01182 09 33373450 33379603 Cca09g01182 09 33373450 33379603 ECH