Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01173 ATGGCACCAAACCAGACCCTGAAAGAGCTACAATGGGCACTGCAAGCAATAAAATCTGAGAGCCTAAATCTGCACAGTATTTCCTTCTACCTTTCCCAACCAACTTCAGGTTGTTATCAAGAAACAGACAACTCCATAACCATAAACATTTCCAAGGAAAATCTTGCATTCTTTTCCCACTTATTGACAACACTAGCAGCACCTAAGAGCCCTGAATCTGCCTTGAGAAACTTGGAGTTCCACAGAGTTGAATGGGACTCACAACAGGTAAGAAACCTTGGAGCCTTGCTGGGGAATAGTCAAAACATACAACAAGTGGTTTTTAGAAGAAACAAGTTCAATGGAAAGGGCCTATCAGAACTTGCTGACATTTTGAAGGCAAATAAAGTGATCAAAGAGATTATGGTCTCAGAATCAGGTATAGGGTCAGTTGGAGCTGGACTCATTGCTTCTGCTCTTAGGGTGAATGACAGTTTGGAGGAGCTGCAGATATGGGAAGACTCAATAGGGTCAAGAGGTGCTGAGGAGCTTTCCAAGATGATTGAAGTTAACTCAACTCTTAAACTGTTGACAATTTTTGACTCAAATTCCATCACAGCAACCCCTCTTATATCTGCAGTTTTGGCAAGGAACAGAAAAATGGAAGTTCATGTTTGGAGTGGGGAAAATGGTGGGGAAAAGAGTTCCAAGGTGGTTGAGTTTGTACCTGAGAATAGCACACTAAGAATCTACAAGCTTAACCTCTCAGGTACTTGTAGAGTTACTTGCTCTTTAGGAATGAACTTCATTGTCAAGTCGCTTGACTTGACTGGCGTCAAGCTAAAGTCGCGGTGCGCCAAGGAATTTAGGTGGGTTTTGGAACAAAACCAGACCCTCAAAGAGGTCAACTTGTCCAGAACATGCCTTAAAGACAAGGGTATTGTGTATGTTGCAGCTGGACTATTCAAGAACCGAAGTTTGCAAACCTTACATCTAACTGGAAATTGGTTCAGTGGAATAGGCGTGGAGCATCTACTATGCCCTTTGAGTAGATTTTCAGCACTGCAAATGCAAGCCAACACTACTTTAACATGTGTTACTTTTGGAGGAGGGAGAACAAGAATAGGAAGGGATGGTCTAGCTGCTGTTATACAGTTTCTTATAACCAATGAGACAGTGAGGCAGTTGGGGATTCATGATGATGAGAGTTTGAGATCAGATGACTTTGTTAGAATCTTCAAGAGTTTGGAGAAGAATGCTAGCTTGAAATGCTTATCTCTACAAGGCTGCAAACGTGTGGAGGGAGAGACATTGCTGCAGACAATTATGGAGACACTACAGATAAATCCTTGGATTGAAGATATTGATCTCTCCAGAACACCTTTACACAACTCGGGAAAGACTCAGGGAATTTATCAGAGGTTAGGCCAGCATGAGAAGACTGAACCAGAAATGGATTTGCTCAAGGACATGCCACTAACAGAGCCCAAGAGTTGCAGAGTTTTCTTTTGTGGCCAAGAATGTGCAGGCAAAACCACACTCTGCCATTCAATATCACAAAATTTCTCGGCTTCGGCGCTTCCCTACTTGGATCACGTCAAAACAATAGTGAACCCAGTGGAGCAGGCTGTCAAAGCAGTAGGAATGAAGATAAAAACTTTCAAGGATGAGGATACAAGGATTTCAATATGGAATCTTGCTGGTCAGCACGAGTTTTTTTCCCTCCATGATCTTATGTTCCCAGGGCATGGTAGTGCATCATTTTTCATCATCATATCAAGTTTATTCAGGAAACCAAGTAACAAAGAACCAAAAACCTCATCTGAAATTGAAGAGGACCTACAATATTGGCTCAGGTTCATAGTTTCCAACTCTAAAAGAGCAATACAACAATGCATGCTACCAAGTGTTGCTGTTGTTCTCACACATTTTGATAAAATTAACCAACCATCAGAAAATTTGCAGCACAGAGATTCAATTCAGAGATTGAGAGACAAGTTCCAAGGCTTCGTTGATTTCTACCCGACTGTATTCACAGTTGATGCAAGATCAACAGCATCAGTTAGTAAGCTTAGTCATCATATCCGGAAGACAAGCAAGACAATTCTCCAAAGAGTGCCACGAGTTTATCAACTTTGCAACGATCTAATACAGATTTTATCAGACTGGAGAACTGAGAACTACAACAAGCCAGCAATGAAGTGGAAGGAGTTTGGTGAGCTATGCCAAGTTAAAGTTCCACCTTTGAGAATTCAATCAAGACATGTTAATAAAGAGAAGGTAGAAATGAGGAGAAGAGCTGTTGCTACCTGTCTACATCACATTGGTGAGGTGATTTACTTTGATGAGTTGGGGTTTCTAATTTTGGATTGTGAGTGGTTCTGTGGTGAAGCACTTGGTCAGCTCATAAAGTTGAATGTTAGGAAGCAACACTCCTCAGAAAACAATGGATTTATTAGCAGGAAGGAACTGGAAAAAATCTTAAGAGGAAGTTTGCAAAGTCCTATTCCTGGTATTGGTTCAAAGGTGTTTGAGAACTTAGATGCTAGTGACCTTGTGAGGATGATGCTAAAACTTGAACTTTGTTATGAGCAAGATCCATCAGATCCAAATTCTCTGCTATTGATTCCCTCCATCCTTGAAGAAGGAAGAGGAAAGCCTCAGAAGTGGCAGCTAAGCATGTCAGACTGCGTTTATGCAGGACGCCATCTTGAGTGTGATGATTCAAGCCACATGTTTCTAACTCCAGGATTCTTCCCTCGTTTACAAGTGCACCTCCACAACAGAATAAAGGCTCTCAAGGATCAACATGGGGCAACTTACAGTCTTGAGAAGTACCTCATTTCAATCAGCATTAATGGAATCTACATAAGAGTAGAACTTGGAGGACAGTTGGGATACTATATTGATGTCCTTGCATGCTCCACCAAAAACTTGACAGAAACTTTGAGAGTCATTCATCAACTTATAATCCCCACAATCCAAAGCGTTTGCCATGGGATCACCTTGACTGAAAATGTCATAAGACCAGAATGTGTGAGAAAACTGACACCCCCTAGGTACAGAAAAACTCAATTTGCTTCCCTGCAGCAACTGAAACAAGCACTACTTTCACTTCCAGCAGATAGCATGTATGATTATCAACACACATGGAGTCCAGTTCTAGACTCTGGTAGGCCAATTCTTCAAGATGGATTTGATTTTGCGCGAGACCTTTTATCCGATGATGATTTCCGAGAAGTGTTGCATCGAAGGTACAATGACCTGTACGATCTAGCACAAGAGCTGCAAGTCCCACCTGAAAATAACCCTGAAGGGCAAGGTCAATCTATAACCTTAAGTGATGAAGCTGAAAAGGTTGAACCAACCTTTGGTGGCATTGCAAAAGGGGTTGAAGCAGTTTTGCAAAGACTCAAGATCATTGAACAAGAAATTAGAGACTTGAAACAGGAAATCCAGGGGCTGAGATACTATGAACATAGACTTCTCCTTGAACTTCATCGCAAAGTGAACCACCTAGCAACCTTCAATGTCCAGGTTGAGGAGAGGAAAGTCCCCAACATGATCTATTTTGTGAAGACAGAAAACTACACAAGGAGACTAGTCACCACCGTGCTTTCTGGCATGAATGCTCTACGGCTTCACATGTTATGCGAATTCCGGGGACAAATGCATGTTGTTGAAGATCAAATGGGGTGTGAAATCATGCAAGTTGATAACGTGGCTGTGAAGTCATTGGCTCCGTACATGAAGAAGTTCATGACATTGGTAACTTTGGCTCTTAAAATAGGAGCTCATCTTGCAGCTGGGATGGGGCAATTGATACCAGACTTGAGCAAGGAGGTGGCTCATTTGGCAGGCTCCTCAGTCCTCTTTGGTGCAGCTGGGGCAACTGCAGCCGGTGTTGTAGGGGCGGCTGCTTTGAATCGTAGAAACAGGTCCATGGAAGGCTCAAGGGACATTCAACAAGACTTAAGAGCAGCACAGCAATGGGTGGTTGATTTCTTAAGGGAGAGAAGGTGCTCTTCGGGGAAGGATATTGCAGAGAAATTTGGACTGTGGAGAGTAAGATACAGGGACAATGGTCAAATTGCATGGATATGCAGGAGGCACATACATGCCAGATCTGCAGAGATAATTGAAGTGCCTGTATGA 4134 0.4245 MAPNQTLKELQWALQAIKSESLNLHSISFYLSQPTSGCYQETDNSITINISKENLAFFSHLLTTLAAPKSPESALRNLEFHRVEWDSQQVRNLGALLGNSQNIQQVVFRRNKFNGKGLSELADILKANKVIKEIMVSESGIGSVGAGLIASALRVNDSLEELQIWEDSIGSRGAEELSKMIEVNSTLKLLTIFDSNSITATPLISAVLARNRKMEVHVWSGENGGEKSSKVVEFVPENSTLRIYKLNLSGTCRVTCSLGMNFIVKSLDLTGVKLKSRCAKEFRWVLEQNQTLKEVNLSRTCLKDKGIVYVAAGLFKNRSLQTLHLTGNWFSGIGVEHLLCPLSRFSALQMQANTTLTCVTFGGGRTRIGRDGLAAVIQFLITNETVRQLGIHDDESLRSDDFVRIFKSLEKNASLKCLSLQGCKRVEGETLLQTIMETLQINPWIEDIDLSRTPLHNSGKTQGIYQRLGQHEKTEPEMDLLKDMPLTEPKSCRVFFCGQECAGKTTLCHSISQNFSASALPYLDHVKTIVNPVEQAVKAVGMKIKTFKDEDTRISIWNLAGQHEFFSLHDLMFPGHGSASFFIIISSLFRKPSNKEPKTSSEIEEDLQYWLRFIVSNSKRAIQQCMLPSVAVVLTHFDKINQPSENLQHRDSIQRLRDKFQGFVDFYPTVFTVDARSTASVSKLSHHIRKTSKTILQRVPRVYQLCNDLIQILSDWRTENYNKPAMKWKEFGELCQVKVPPLRIQSRHVNKEKVEMRRRAVATCLHHIGEVIYFDELGFLILDCEWFCGEALGQLIKLNVRKQHSSENNGFISRKELEKILRGSLQSPIPGIGSKVFENLDASDLVRMMLKLELCYEQDPSDPNSLLLIPSILEEGRGKPQKWQLSMSDCVYAGRHLECDDSSHMFLTPGFFPRLQVHLHNRIKALKDQHGATYSLEKYLISISINGIYIRVELGGQLGYYIDVLACSTKNLTETLRVIHQLIIPTIQSVCHGITLTENVIRPECVRKLTPPRYRKTQFASLQQLKQALLSLPADSMYDYQHTWSPVLDSGRPILQDGFDFARDLLSDDDFREVLHRRYNDLYDLAQELQVPPENNPEGQGQSITLSDEAEKVEPTFGGIAKGVEAVLQRLKIIEQEIRDLKQEIQGLRYYEHRLLLELHRKVNHLATFNVQVEERKVPNMIYFVKTENYTRRLVTTVLSGMNALRLHMLCEFRGQMHVVEDQMGCEIMQVDNVAVKSLAPYMKKFMTLVTLALKIGAHLAAGMGQLIPDLSKEVAHLAGSSVLFGAAGATAAGVVGAAALNRRNRSMEGSRDIQQDLRAAQQWVVDFLRERRCSSGKDIAEKFGLWRVRYRDNGQIAWICRRHIHARSAEIIEVPV 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01173 1377 Pfam C-terminal of Roc, COR, domain 748 924 IPR032171 -
Cca09g01173 1377 SMART LRR_RI_2 289 316 - -
Cca09g01173 1377 SMART LRR_RI_2 128 155 - -
Cca09g01173 1377 SMART LRR_RI_2 317 344 - -
Cca09g01173 1377 SMART LRR_RI_2 156 183 - -
Cca09g01173 1377 Gene3D Ribonuclease Inhibitor 50 217 IPR032675 -
Cca09g01173 1377 Gene3D Ribonuclease Inhibitor 350 477 IPR032675 -
Cca09g01173 1377 Gene3D - 491 694 IPR027417 -
Cca09g01173 1377 Coils Coil 1124 1151 - -
Cca09g01173 1377 Pfam Ras of Complex, Roc, domain of DAPkinase 493 620 - -
Cca09g01173 1377 PANTHER PROTEIN TORNADO 1 1 1366 - -
Cca09g01173 1377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 689 IPR027417 -
Cca09g01173 1377 SUPERFAMILY RNI-like 12 460 - -
Cca09g01173 1377 Pfam Leucine Rich repeat 288 309 IPR001611 GO:0005515
Cca09g01173 1377 Pfam Leucine Rich repeat 316 338 IPR001611 GO:0005515
Cca09g01173 1377 Gene3D Ribonuclease Inhibitor 221 349 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01173 - - gmx:100817598 2520.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01173 09 33218010 33223207 Cca09g01173 09 33218010 33223207 ECH