Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca09g01144 | ATGGTTTCAGACGAAGAAATATCCGAAGCGGTTTCGTGGTTGTTCCGCGAATCGAACCCTAGGAGCCGAAGCTTCACGACGCTGAAGGAGGTGGTGGAGGAGCTTCAGGCCAAGCTCGGCCACGACCTCACTCACAAGGTCGACTACATCGCCGCGCAGATCAACCTCCTCTTcgcctcccagccgccgccgccgcacactccgccgctgccgAAGGACCATTTTGCCCTTCCGGAAAACCCTAATTTCCGCCCTGCTCCTGTCAGTGCTGAGTTTCAGTCTCGGAGCTTCGCTTCCGAGGCTCCTCCCCCTGCTCCCGCTGCTGAAGGCAGCGTGGCTCCCAAGGAAAGTGCTGAAACTAAGGTGAAGAGAAGAGGTGGCCCTGGAGGTCTCATCAAACTTTGTGGTGTTTCGCCTGAACTTCAGGTCATTGTTGGCCAGCCGGTATTGCCAAGGACACAGATTGTGAAGCAACTGTGGGCTTACATTAAGAAAAACAATCTCCAAGACTCCAGCAACAAAAGGAAAATAATTTGTAATGATGAGCTGCGCGTGGTGTTTGAGACGGATTGTACTGATATGTTTAAGATGAACAAGTTGCTAGCTAAGCACATTATCCCCCTTGAACCATCCAAACCGCGTGTTCCAAAGAAACAGAAGGTAGACGTGGAATCGGGAACAAAAAGTGCTACACCTACTCCCTCTGTGATAATATCTGATGCACTTGCTAACTTTTTTGGCATTACTGGAAGGGAGATGCTACAGTCTGAGGTTTTGAGACGTATCTGGGAGTACATAAAAGTCAATCAGCTAGAGGATCCTGTGAATCCTATGGCAATTGTATGTGATGCAAAACTTCAGGAGATCTTTGGCTGTGAAAGCATTTCGGCATTGGGGATACCTGAAGTTTTGGGCCGTCATCATATTTTTAGGAGTTCATGA | 942 | 0.4618 | MVSDEEISEAVSWLFRESNPRSRSFTTLKEVVEELQAKLGHDLTHKVDYIAAQINLLFASQPPPPHTPPLPKDHFALPENPNFRPAPVSAEFQSRSFASEAPPPAPAAEGSVAPKESAETKVKRRGGPGGLIKLCGVSPELQVIVGQPVLPRTQIVKQLWAYIKKNNLQDSSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIPLEPSKPRVPKKQKVDVESGTKSATPTPSVIISDALANFFGITGREMLQSEVLRRIWEYIKVNQLEDPVNPMAIVCDAKLQEIFGCESISALGIPEVLGRHHIFRSS | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca09g01144 | 313 | ProSiteProfiles | SWIB/MDM2 domain profile. | 130 | 207 | IPR003121 | - | |
| Cca09g01144 | 313 | ProSiteProfiles | SWIB/MDM2 domain profile. | 231 | 310 | IPR003121 | - | |
| Cca09g01144 | 313 | Pfam | DEK C terminal domain | 2 | 58 | IPR014876 | - | |
| Cca09g01144 | 313 | Gene3D | SWIB/MDM2 domain | 126 | 215 | IPR036885 | - | |
| Cca09g01144 | 313 | Gene3D | SWIB/MDM2 domain | 226 | 313 | IPR036885 | - | |
| Cca09g01144 | 313 | SUPERFAMILY | SWIB/MDM2 domain | 227 | 308 | IPR036885 | - | |
| Cca09g01144 | 313 | PANTHER | - | 1 | 81 | - | - | |
| Cca09g01144 | 313 | PANTHER | - | 107 | 309 | - | - | |
| Cca09g01144 | 313 | PANTHER | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D | 107 | 309 | - | - | |
| Cca09g01144 | 313 | PANTHER | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D | 1 | 81 | - | - | |
| Cca09g01144 | 313 | CDD | SWIB-MDM2_like | 135 | 205 | - | - | |
| Cca09g01144 | 313 | MobiDBLite | consensus disorder prediction | 91 | 125 | - | - | |
| Cca09g01144 | 313 | Pfam | SWIB/MDM2 domain | 135 | 205 | IPR003121 | - | |
| Cca09g01144 | 313 | Pfam | SWIB/MDM2 domain | 237 | 307 | IPR003121 | - | |
| Cca09g01144 | 313 | CDD | SWIB_like | 238 | 307 | - | - | |
| Cca09g01144 | 313 | SUPERFAMILY | SWIB/MDM2 domain | 124 | 211 | IPR036885 | - | |
| Cca09g01144 | 313 | Gene3D | - | 1 | 59 | - | - | |
| Cca09g01144 | 313 | SMART | swib_2 | 131 | 210 | IPR019835 | - | |
| Cca09g01144 | 313 | SMART | swib_2 | 232 | 313 | IPR019835 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca09g01144 | Cca-Chr9 | 32731514 | 32735827 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SWI/SNF-BAF60b | Cca09g01144 | SWIB | 1.5e-19 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca09g01144 | K15223 | - | gmx:100801960 | 477.633 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca09g01144 | 09 | 32731514 | 32735827 | Cca09g01144 | 09 | 32731514 | 32735827 | ECH |