Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01140 ATGAGTTTCGTGCCAAAGGAGACAATCGAAGTCATTGCACAGAGCATTGGCATCACCAACTTATCCTCCGATGTTGCCCTCGCTCTCGCTCCCGATCTCGAATACCGCATTCGCGAAATCATGCAGGAGTCGATAAAATGCATGCGCCATTCGATGAGAACTTGTCTTACTACAGATGATGTGGATACTGCACTTGCATTGAGAAATTTAGAGCCGATATATGGGTTCACCTCTAGTGATCCTCTGCGGTTCAAAAGAGCTGCTGGACATAAGGATTTGTTTTACATTGATGACAAAGATGTGGAAATTAAAGATCTAATCGAAGCTCCTTTACCAAAAGCACCCCTTGATACATCAATTACCAGTCACTGGTTGGCTATTGAAGGTGTTCAGCCTGCAATCCCTGAAAATGCTCCAGTTGAAGCTCCCCCTGAGATAAGAAAATCTGAATATAAGGAAGATGGTCCTATTGATGTTAAATTACCTGTTAAACATTTAATAACAAGGGAGCTTCAGCTTTACTATGAGAAAATAACTGAGCTAACTTTAAATAAGCCTGGATCCATTCCTTTTAGAAGAGCATTGATTAGCTTGGCAGCAGACTCGGGACTCCATCCCTTAGTTCCATATTTCACATGCTTTGTTGCTGATGAGGTGGCACGAAATTTAAATAATTTTGCTGTTTTGTTTGCCTTGATGCGCCTTGTGCGGAGCCTTTTGCAAAATTCTCAGATACATATAGAACTTTATTTACATCAATTGATGCCGGCTATCATTACTTGCATTGTTGCAAAAAAGATAGGAAACAGACTATCTGATAATCACTGGGAGCTTAGGAACTTCAGTGCTAATCTTGTTGCTTCAATATGCCAAAGATTTGGGCATGTTTATCACAATCTTCAGTCACGTGTGACAAAGACATTTCTTCATTCTTTCTTGGACCCTACAAAAGCTCTGCCCCAACACTATGGTGCAATTAAAGGAATAGAAGCCCTTGGGTCAAGAGTGATTCGCTTGCTTATACTTCCAAATCTCGAGCCATATTTGCATCTTCTTGAGCCAGAAATGCAACCCGAGAAGCAAAAAAATGAAATTAAGAGGAATGAAGCTTGGCGAGTTTACGGAGCCTTGCTGGGTGCAGTAGGTCAATGTACGTATGAAAAGGTCAAAATGTTCACCAGTTTGCTCTCTCCTACAACTCGTGTTACTTCAAGAGGCAATGGAAAAGCCATGATTGCAATGTCAGGGAAACGAAAAGCCAGTGCAGACAATCTAATGCAGCAGCAGCAGCAACCTCCACTGAAGAAACTTGCAGCAGATGGCCCTGGTGGTGTGGTGCCAATGAACTCCATGTCAGACATGCAAGGTTCAACAGGTGGATTTTCCACCATGATGGGGGTTCCTTCCATGTCGATGGCTCGCCAATTATCCAACGACAGCGCGCAGGGGAGAGAGGTTGGAGGAGACCAACAAAGGAAGGTGTCTTCCACTCTTGCTCAGGCTTGGAAGGATGACATTGATGCAGGAAATTTGGTGTCATCAGTGGTTGAATTGTTTGGTGAAAGTGTCTTGCCATTTGTTCCAAACCCTGAAGCATGTATGTTTTTGTAG 1611 0.4302 MSFVPKETIEVIAQSIGITNLSSDVALALAPDLEYRIREIMQESIKCMRHSMRTCLTTDDVDTALALRNLEPIYGFTSSDPLRFKRAAGHKDLFYIDDKDVEIKDLIEAPLPKAPLDTSITSHWLAIEGVQPAIPENAPVEAPPEIRKSEYKEDGPIDVKLPVKHLITRELQLYYEKITELTLNKPGSIPFRRALISLAADSGLHPLVPYFTCFVADEVARNLNNFAVLFALMRLVRSLLQNSQIHIELYLHQLMPAIITCIVAKKIGNRLSDNHWELRNFSANLVASICQRFGHVYHNLQSRVTKTFLHSFLDPTKALPQHYGAIKGIEALGSRVIRLLILPNLEPYLHLLEPEMQPEKQKNEIKRNEAWRVYGALLGAVGQCTYEKVKMFTSLLSPTTRVTSRGNGKAMIAMSGKRKASADNLMQQQQQPPLKKLAADGPGGVVPMNSMSDMQGSTGGFSTMMGVPSMSMARQLSNDSAQGREVGGDQQRKVSSTLAQAWKDDIDAGNLVSSVVELFGESVLPFVPNPEACMFL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01140 536 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Cca09g01140 536 Pfam TAF6 C-terminal HEAT repeat domain 258 345 IPR011442 GO:0006367
Cca09g01140 536 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 536 - -
Cca09g01140 536 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Cca09g01140 536 SUPERFAMILY Histone-fold 1 65 IPR009072 GO:0046982
Cca09g01140 536 SMART TAF_cls 2 68 IPR004823 -
Cca09g01140 536 SUPERFAMILY ARM repeat 195 383 IPR016024 -
Cca09g01140 536 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 536 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Cca09g01140 536 CDD TAF6C 164 380 IPR011442 GO:0006367
Cca09g01140 536 Gene3D - 163 368 IPR046344 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01140 Cca-Chr9 32606777 32613992 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01140 K03131 - gmx:100799998 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01140 09 32606777 32613992 Cca09g01140 09 32606777 32613992 ECH