Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01133 ATGCTTCCTCAGCGCATGAAGAAAGCAATCACTGATAACCCTAAGAAGCTTGCCAACTTGATTGACCTCATCAACCTTCCATCCACGCTCAGAGAATTCGTGGGTCAGTCTCAGATTTCTCGCTTGGGCTGTTTCAAGTGCGTTTGGTCCTACATCAAAACCAATAATCTTCAGGATCCGAACAACAAGAATGTGGTCAACTGTGATGAGAAGTTAAAAAGTATTTTGTTGGGGAAACCTCAGTTGTGGTGGTGTCATTTGAGttgctacaggttgttatccgaaattaataaCTGTGTGGCGGCTATTTGGATGGAGCTTATCTACTGGGAAATCATTTCCGCTCTTCAATCCCAATCCAAATCCCTTCTCCATCAATTCTCTTCCGTCATGTTCGCTCACAGGGTCTTGTCCCGTTCCTCTGCCACCCTTTCTCGAAGCTTCACCCTTTTCTCTGTTTCACGAAATTCCCAACCTTCATCCACCACCCTCTCCAATCATTTCCATTCCCTCCTTCACCCATCACCCAACAAGCTGATTCCAGTTCAAGCCAGTTTGCTGAATCCAATGAATTCATCTTTGACTTCGAGATTCGGATTTTCTTCAACAGCCTCACCCGAACCTGCAAGTGAAGAAGCAAAGGTAACTGATCAGTCTGAACAAGCCAAAGCTGCGGATCAAACCAAAGAATCAGATATAGAGAGTGAATGTGATCTATCCAGGGATGACTTGATAAAGCTTGTTGCTGAGAAGGAACAACTTTTGAAGTTGAAGCACAAGGAAATTGAGAAAATGCAGGATAAAGTTCTGCGAACTTATGCAGAGATGGAGAATGTCATGGACAGGACAAGGCGCGAAGCAGGGAATTCGAAAAAATTTGCTATACAGAATTTTGCGAAGAGTTTACTAGATGTTTCTGACAATTTAGGAAGAGCTTCCTCAGTTGTAAAGGACAGCTTTTCGAAAATTGAAACTCCTAAGGAGTCTTCTGAAGCAGCACAACTCCTGAAAACACTTCTAGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACAAATGAGCCATTTGATCCACACAGGCACAATGCCATCTTCCAAATCCCTGATGCTTCCAGGGCCCCGGGCACTGTTGGACTTGTTCTGAAGGCAGGATATATGCTCTATGATCGAGTTCTTCGTCCAGCCGAAGTTGGTGTCACTCAAGAAGTGGAGGATAACAAAGCATCTGAGTGA 1272 0.4277 MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQLWWCHLSCYRLLSEINNCVAAIWMELIYWEIISALQSQSKSLLHQFSSVMFAHRVLSRSSATLSRSFTLFSVSRNSQPSSTTLSNHFHSLLHPSPNKLIPVQASLLNPMNSSLTSRFGFSSTASPEPASEEAKVTDQSEQAKAADQTKESDIESECDLSRDDLIKLVAEKEQLLKLKHKEIEKMQDKVLRTYAEMENVMDRTRREAGNSKKFAIQNFAKSLLDVSDNLGRASSVVKDSFSKIETPKESSEAAQLLKTLLEGVEMTEKQLAEVLKKFGVEKFDPTNEPFDPHRHNAIFQIPDASRAPGTVGLVLKAGYMLYDRVLRPAEVGVTQEVEDNKASE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01133 423 CDD GrpE 263 412 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca09g01133 423 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 359 414 IPR009012 GO:0006457
Cca09g01133 423 SMART swib_2 20 92 IPR019835 -
Cca09g01133 423 PANTHER GRPE PROTEIN 137 416 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca09g01133 423 Pfam SWIB/MDM2 domain 25 79 IPR003121 -
Cca09g01133 423 ProSitePatterns grpE protein signature. 369 412 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca09g01133 423 SUPERFAMILY SWIB/MDM2 domain 13 83 IPR036885 -
Cca09g01133 423 Coils Coil 248 268 - -
Cca09g01133 423 Gene3D SWIB/MDM2 domain 20 103 IPR036885 -
Cca09g01133 423 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 250 358 IPR013805 -
Cca09g01133 423 Gene3D Head domain of nucleotide exchange factor GrpE 358 413 IPR009012 GO:0006457
Cca09g01133 423 MobiDBLite consensus disorder prediction 213 235 - -
Cca09g01133 423 ProSiteProfiles SWIB/MDM2 domain profile. 19 102 IPR003121 -
Cca09g01133 423 CDD SWIB-MDM2_like 30 76 - -
Cca09g01133 423 Hamap Protein GrpE [grpE]. 211 414 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca09g01133 423 PANTHER GRPE PROTEIN HOMOLOG 137 416 - -
Cca09g01133 423 MobiDBLite consensus disorder prediction 198 235 - -
Cca09g01133 423 PRINTS GrpE protein signature 393 412 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca09g01133 423 PRINTS GrpE protein signature 270 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca09g01133 423 PRINTS GrpE protein signature 366 381 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Cca09g01133 423 Gene3D - 242 357 IPR013805 -
Cca09g01133 423 Pfam GrpE 246 413 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01133 Cca-Chr9 32484294 32492752 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Cca09g01133 GrpE 7.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01133 K03687 - gmx:100812682 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01133 09 32484294 32492752 Cca09g01133 09 32484294 32492752 ECH