Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01132 ATGGAACTTGCCATAGTACCGTTCGACTCAAGTTCCAAAGAGAATCAAACACTTTATCAAGAGTGGTTCAATTATGCAGATGCAGATGGGGATGGTCGTTTTACGGGGAATGAAGCTATCAAGTTTTTTACCATGTCAAACTTGTCTCGACAAGACCTAAAACAGGTATGGGCCATTGCAGATTCAAGACGAGAAGGATATCTTGGTTTCAAAGAATTTGTCATAGCTATGCAACTCATTTCTTTAGGACAATCTGGATACTCAATAACACATGACTTGCTAGATAGTGAAGTTATGGAAATTGTAAAACCACCCCAAATGGAAGGTTTGGATGCACAACTTGCTAAGAAAAAACGCAAACAAAAAGATAAAGAATTAAGTGTTAGTCCTCAACCATCACCTGCAAGTTATTGGTTTTCTACAAAATCAGTAAAAAAAGTTTCAGCTTCATCAGTGACATCAATTATAGATGGTTTAAAGAGACTTTACCTTCAAAAGTTGAAACCGTTAGAAGTTGCTTATCGCTATAATGATTTTGTTTCTCCTATATTGACAAATAGTGACTTTGATGCCAAACCTATGGTTCTGCTTTTGGGCCAATACTCAACTGGGAAAACAACATTTATTAAACATATGCTTAAAAGTAATTATCCAGGAGCTCATATTGGACCAGAGCCAACAACGGATAGGTTTGTTGCTGTAATGTCTGGACCAGATGAAAGAAGCATTCCTGGCAATACTATTGCTGTCCAAGCAGATATGCCATTTTCAGGCCTTACAACTTATGGCTCAGCATTTTTATCCAAATTTGAGTGTTCTCAAATGCCTCATCCTCTATTGGATCACATTACATTTGTTGATAGCCCTGGAGTTTTATCTGGAGAAAAGCAAAGGACACAAAGACAATATGATTTTACAGGTGTAACATCTTGGTTTGCCGCTAAATGTGATTTAATACTTCTTCTATTTGATCCTCACAAACTTGATGTTAGTGATGAGTTCAAACGTGTGATATCATCCCTTAAGGGACATGATGACAAAATTCGAGTGGTTTTGAACAAGGCAGACCAAGTTGACACTCAACAATTAATGAGAATATATGGTGCATTGATGTGGTCACTTGGGAAAGTGTTAAATGTTCCCGAAGTCATGCGAGTATATATTGGCTCCTTCAACGACAAGTCTATAAATGATTCTGTTAGTGGTCCACTTGGTAATGAGCTCTTCCAAAAAGAACAAGAGGACCTTCTTTCAGATTTGAAAGATATACCAAAAAAAGCTTGTGATCGTAAAATCAATGAATTCGTAAAACGAGCCCGAGCTGCAAGGATACATGCTTATATCATCAGTCATCTTAAAAAGCAAATGCCTGCTATGATAGGCAAAGCTAAAGCTCAACAACGACTCATAGATAATTTAGATGCTGAGTTCGTAAAGGTACAAAAAGAGTATCATCTACCACCTGGTGACTTCCCAAATGTTGAACATTTTAAGGAGATCTTGAGTGGTTACAACATTGACAAGTTTGAGAAATTGAACAAAAAAATGATACAAACAGTGGATGACATGCTTGCTTACGATATTCCTAACCTTTTGAAGACATTTAGAAATCCATATGGTTAA 1623 0.3685 MELAIVPFDSSSKENQTLYQEWFNYADADGDGRFTGNEAIKFFTMSNLSRQDLKQVWAIADSRREGYLGFKEFVIAMQLISLGQSGYSITHDLLDSEVMEIVKPPQMEGLDAQLAKKKRKQKDKELSVSPQPSPASYWFSTKSVKKVSASSVTSIIDGLKRLYLQKLKPLEVAYRYNDFVSPILTNSDFDAKPMVLLLGQYSTGKTTFIKHMLKSNYPGAHIGPEPTTDRFVAVMSGPDERSIPGNTIAVQADMPFSGLTTYGSAFLSKFECSQMPHPLLDHITFVDSPGVLSGEKQRTQRQYDFTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLKGHDDKIRVVLNKADQVDTQQLMRIYGALMWSLGKVLNVPEVMRVYIGSFNDKSINDSVSGPLGNELFQKEQEDLLSDLKDIPKKACDRKINEFVKRARAARIHAYIISHLKKQMPAMIGKAKAQQRLIDNLDAEFVKVQKEYHLPPGDFPNVEHFKEILSGYNIDKFEKLNKKMIQTVDDMLAYDIPNLLKTFRNPYG 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01132 540 Gene3D - 195 423 IPR027417 -
Cca09g01132 540 Coils Coil 463 483 - -
Cca09g01132 540 SMART efh_1 18 46 IPR002048 GO:0005509
Cca09g01132 540 SMART efh_1 52 80 IPR002048 GO:0005509
Cca09g01132 540 Gene3D - 159 531 - -
Cca09g01132 540 CDD EHD 194 438 - -
Cca09g01132 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 462 IPR027417 -
Cca09g01132 540 ProSiteProfiles EH domain profile. 15 108 IPR000261 GO:0005515
Cca09g01132 540 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 189 425 IPR030381 GO:0005525
Cca09g01132 540 Pfam Domain of unknown function (DUF5600) 430 531 IPR040990 -
Cca09g01132 540 PANTHER CALCIUM-BINDING EF HAND PROTEIN 19 538 - -
Cca09g01132 540 SMART eh_3 8 103 IPR000261 GO:0005515
Cca09g01132 540 CDD EH 19 85 IPR000261 GO:0005515
Cca09g01132 540 SUPERFAMILY EF-hand 11 89 IPR011992 -
Cca09g01132 540 Pfam N-terminal EH-domain containing protein 158 190 IPR031692 -
Cca09g01132 540 PANTHER EH DOMAIN 19 538 - -
Cca09g01132 540 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Cca09g01132 540 Pfam Cytoskeletal-regulatory complex EF hand 21 80 IPR000261 GO:0005515
Cca09g01132 540 Gene3D - 10 108 - -
Cca09g01132 540 Pfam Dynamin family 195 354 IPR045063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01132 Cca-Chr9 32462428 32468827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01132 1 539 EF-hand Containing Proteins AT3G20290 77.574 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01132 K12483 - gmx:100816958 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01132 09 32462428 32468827 Cca09g01132 09 32462428 32468827 ECH